RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SGO2Q562F6 1265 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 TRIM68Q6AZZ1 485 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SH3KBP1Q96B97 665 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 NCOA5Q9HCD5 579 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 BAIAP2L1Q9UHR4 511 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 MLH3Q9UHC1 1453 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 E9PMD0 336 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 AFPP02771 609 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 E4F1Q66K89 784 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 APOBEC3FQ8IUX4 373 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 IFNL3Q8IZI9 196 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 DNAJC17Q9NVM6 304 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ATP10AO60312 1499 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 VAMP4O75379 141 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 NPM3O75607 178 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ANP32DO95626 131 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 A1BGP04217 495 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 KYAT1Q16773 422 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SDE2Q6IQ49 451 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ARHGEF25Q86VW2 580 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 DBNDD2Q9BQY9 259 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 CALN1Q9BXU9 219 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 IQANK1A0A1B0GTG1 560 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 BMP3P12645 472 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ATP5JP18859 108 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 TRAPPC10P48553 1259 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ZNF75DP51815 510 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 E2F5Q15329 346 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 OR9Q1Q8NGQ5 310 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 AFG1LQ8WV93 481 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 MYO3BQ8WXR4 1341 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 KDM5CP41229 1560 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8JA6NMD2 632 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 MESDQ14696 234 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 CAPN12Q6ZSI9 719 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SMAP1Q8IYB5 467 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 NLRP4Q96MN2 994 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 TRIM55Q9BYV6 548 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 PARVGQ9HBI0 331 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 HOXC10Q9NYD6 342 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 K7ERI5 159 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 TJP3O95049 919 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 TTC39CQ8N584 583 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 MAGOHBQ96A72 148 aaKnown RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ZNF653Q96CK0 615 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GIMAP4Q9NUV9 329 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ARHGAP10A1A4S6 786 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8MH3BSY2 632 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 PHKA2P46019 1235 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 JAK3P52333 1124 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SESN3P58005 492 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SFSWAPQ12872 951 aaKnown RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GTF2H3Q13889 308 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 FLOT2Q14254 428 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 RCN2Q14257 317 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ERFEQ4G0M1 354 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 FBXO40Q9UH90 709 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SCOCQ9UIL1 159 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 NFU1Q9UMS0 254 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ABCC12Q96J65 1359 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SYCE1LA8MT33 242 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 KRT1P04264 644 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 FAM26FQ5R3K3 315 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SYDE2Q5VT97 1194 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 PBXIP1Q96AQ6 731 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GCOM2Q9BZD3 368 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 KLC2Q9H0B6 622 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 RGL1Q9NZL6 768 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 L3MBTL1Q9Y468 752 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 HSPD1P10809 573 aaKnown RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 RBM6P78332 1123 aaKnown RBP7.37□□□□□ -1.23
SCN1A-204ENST00000423058 PNOCQ13519 176 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 RRM2BQ7LG56 351 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 PODNQ7Z5L7 613 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 BEST2Q8NFU1 509 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 STRIP2Q9ULQ0 834 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ZBBXA8MT70 800 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 KDM1AO60341 852 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 DNAJC6O75061 913 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ARIH2O95376 493 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 GSNP06396 782 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 KRT80Q6KB66 452 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 FANCBQ8NB91 859 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 TTC8Q8TAM2 541 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 NCLNQ969V3 563 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ULK4Q96C45 1275 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 ASIC4Q96FT7 647 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 SYNDIG1Q9H7V2 258 aa7.37□□□□□ -1.23
SCN1A-204ENST00000423058 HUS1O60921 280 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ZBED1O96006 694 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 HSPA1AP0DMV8 641 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 HSPA1BP0DMV9 641 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PHKG1Q16816 387 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ACCSLQ4AC99 568 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TWF2Q6IBS0 349 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MMS22LQ6ZRQ5 1243 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PHF21AQ96BD5 680 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MYL10Q9BUA6 226 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 EHD2Q9NZN4 543 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 NXF1Q9UBU9 619 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms