RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZFRQ96KR1 1074 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 ASCC2Q9H1I8 757 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 GOLPH3LQ9H4A5 285 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PPARGC1AQ9UBK2 798 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 MYH9P35579 1960 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PAPOLAP51003 745 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 FKBP3Q00688 224 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 RAPH1Q70E73 1250 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 HDDC2Q7Z4H3 204 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PATL1Q86TB9 770 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 SUGP1Q8IWZ8 645 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 HACE1Q8IYU2 909 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 KCNK16Q96T55 309 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 POLKQ9UBT6 870 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 USTQ9Y2C2 406 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 URB2Q14146 1524 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 FAM107AO95990 144 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PTK2Q05397 1052 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 IQCB1Q15051 598 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 TTC6Q86TZ1 520 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 MYCT1Q8N699 235 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 TRIM45Q9H8W5 580 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 CACNA1FO60840 1977 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 hCG_1984214I3L0E3 225 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 AGTP01019 485 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 OTUD6AQ7L8S5 288 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 ST13P5Q8NFI4 369 aaPredicted RBP13.83□□□□□ -0.19
COL6A3-206ENST00000409809 LSG1Q9H089 658 aaKnown RBP13.83□□□□□ -0.19
COL6A3-206ENST00000409809 SUCLA2Q9P2R7 463 aaPredicted RBP13.83□□□□□ -0.19
COL6A3-206ENST00000409809 SLC13A4Q9UKG4 626 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 MAST1Q9Y2H9 1570 aa13.83□□□□□ -0.19
COL6A3-206ENST00000409809 MEIS1O00470 390 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 PAMP19021 973 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 MFAP3P55082 362 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 TMEM259Q4ZIN3 620 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 AGBL2Q5U5Z8 902 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 TTC13Q8NBP0 860 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 NYXQ9GZU5 481 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ARIH1Q9Y4X5 557 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ADCY9O60503 1353 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 E2F6O75461 281 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CABP7Q86V35 215 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CNOT6LQ96LI5 555 aaKnown RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CYTH2Q99418 400 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 NHEJ1Q9H9Q4 299 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ZBTB7BO15156 539 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 BUB1O43683 1085 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 TJP3O95049 919 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ARL4CP56559 192 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 OCRLQ01968 901 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 BTBD6Q96KE9 485 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 PCDHA7Q9UN72 937 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 MYH11P35749 1972 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ENO4A6NNW6 628 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ABCB4P21439 1286 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CAPRIN1Q14444 709 aaKnown RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CC2D2BQ6DHV5 1058 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 PROM2Q8N271 834 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 USP33Q8TEY7 942 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 HACD3Q9P035 362 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 H0Y3Z8 333 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 NCF2P19878 526 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 MARK3P27448 753 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 CHRNA3P32297 505 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 DPH6Q7L8W6 267 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 NFU1Q9UMS0 254 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 GPATCH8Q9UKJ3 1502 aaKnown RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 TMPRSS15P98073 1019 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 C16orf89Q6UX73 402 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 OLFM1Q99784 485 aa13.83□□□□□ -0.2
COL6A3-206ENST00000409809 USP15Q9Y4E8 981 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-206ENST00000409809 ADAMTS12P58397 1594 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 GOLGA8RI6L899 631 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 COPEO14579 308 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 CTIFO43310 598 aaKnown RBP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 SMARCA1P28370 1054 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PRUNE1Q86TP1 453 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 RIBC1Q8N443 379 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 SH3GL1Q99961 368 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 FANCEQ9HB96 536 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 CD209Q9NNX6 404 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 DENND2AQ9ULE3 1009 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 FAM187AA6NFU0 413 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PLS3P13797 630 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 NPR1P16066 1061 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 AARSP49588 968 aaKnown RBP eCLIP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 ZNF658Q5TYW1 1059 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 IFNL2Q8IZJ0 200 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PYROXD1Q8WU10 500 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 CHPF2Q9P2E5 772 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 MYH6P13533 1939 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 UHRF1BP1LA0JNW5 1464 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PIK3R2O00459 728 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 TBC1D4O60343 1298 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 TAF12Q16514 161 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 MAGEB6Q8N7X4 407 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 NLRC4Q9NPP4 1024 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 ABCC1P33527 1531 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 POMGNT1Q8WZA1 660 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms