RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SFNP31947 248 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 GRK4P32298 578 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 DUSP28Q4G0W2 176 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 TMEM63BQ5T3F8 832 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 METTL7BQ6UX53 244 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 CALML4Q96GE6 196 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 GOLPH3LQ9H4A5 285 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 CCDC39Q9UFE4 941 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 NOP56O00567 594 aaKnown RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 FARP2O94887 1054 aaPredicted RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 CCNE2O96020 404 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 CYBAP13498 195 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 PRKAR2AP13861 404 aaKnown RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 ACTR2P61160 394 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 LAMC2Q13753 1193 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 EPHA7Q15375 998 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 GJC2Q5T442 439 aaPredicted RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 HAUS3Q68CZ6 603 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 B3GNT9Q6UX72 402 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 SMAP1Q8IYB5 467 aaPredicted RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 PDILTQ8N807 584 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 SPATA33Q96N06 139 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 EIF2AK1Q9BQI3 630 aaKnown RBP20.29■□□□□ 0.84
SDC1-203ENST00000403076 CCSER1Q9C0I3 900 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 KCNH3Q9ULD8 1083 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 PTPN22Q9Y2R2 807 aa20.29■□□□□ 0.84
SDC1-203ENST00000403076 MBD3O95983 291 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 AKR1A1P14550 325 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 SYKP43405 635 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 NDUFA8P51970 172 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 KARSQ15046 597 aaKnown RBP20.28■□□□□ 0.84
SDC1-203ENST00000403076 MIS18BP1Q6P0N0 1132 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 TRPV1Q8NER1 839 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 RDM1Q8NG50 284 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 PLIN2Q99541 437 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 PCDHA10Q9Y5I2 948 aa20.28■□□□□ 0.84
SDC1-203ENST00000403076 PSAPP07602 524 aa20.27■□□□□ 0.84
SDC1-203ENST00000403076 LIG1P18858 919 aa20.27■□□□□ 0.84
SDC1-203ENST00000403076 FAM160A1Q05DH4 1040 aa20.27■□□□□ 0.84
SDC1-203ENST00000403076 OR6J1Q8NGC5 347 aa20.27■□□□□ 0.84
SDC1-203ENST00000403076 DYDC2Q96IM9 177 aa20.27■□□□□ 0.84
SDC1-203ENST00000403076 MMTAG2Q9BU76 263 aaKnown RBP20.27■□□□□ 0.84
SDC1-203ENST00000403076 BACH1O14867 736 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 POLR2DO15514 142 aaKnown RBP20.27■□□□□ 0.83
SDC1-203ENST00000403076 DYNC1LI2O43237 492 aaPredicted RBP20.27■□□□□ 0.83
SDC1-203ENST00000403076 PTGS1P23219 599 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 CYP4A11Q02928 519 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 ARHGAP1Q07960 439 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 RRAGBQ5VZM2 374 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 CTU1Q7Z7A3 348 aaKnown RBP20.27■□□□□ 0.83
SDC1-203ENST00000403076 TPH2Q8IWU9 490 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 SEPT1Q8WYJ6 367 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 AP5M1Q9H0R1 490 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 RGL1Q9NZL6 768 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 HPSEQ9Y251 543 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 KDM3AQ9Y4C1 1321 aa20.27■□□□□ 0.83
SDC1-203ENST00000403076 FAM237AA0A1B0GTK4 181 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 MED24O75448 989 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 INHAP05111 366 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 P4HBP07237 508 aaKnown RBP20.26■□□□□ 0.83
SDC1-203ENST00000403076 RPA1P27694 616 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 CTTNQ14247 550 aaKnown RBP20.26■□□□□ 0.83
SDC1-203ENST00000403076 SKOR2Q2VWA4 1001 aaPredicted RBP20.26■□□□□ 0.83
SDC1-203ENST00000403076 BANK1Q8NDB2 785 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 NEK9Q8TD19 979 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 GPT2Q8TD30 523 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 PYM1Q9BRP8 204 aaKnown RBP20.26■□□□□ 0.83
SDC1-203ENST00000403076 POLR3CQ9BUI4 534 aaPredicted RBP20.26■□□□□ 0.83
SDC1-203ENST00000403076 NT5C3AQ9H0P0 336 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 TELO2Q9Y4R8 837 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 DOCK5Q9H7D0 1870 aa20.26■□□□□ 0.83
SDC1-203ENST00000403076 POTEB3A0JP26 581 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 SEPT4O43236 478 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 ADCY6O43306 1168 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 SLC26A4O43511 780 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 ZNF202O95125 648 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 SUPT20HL2P0C7V6 817 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 CCND3P30281 292 aaPredicted RBP20.25■□□□□ 0.83
SDC1-203ENST00000403076 HSDL1Q3SXM5 330 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 SWSAP1Q6NVH7 229 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 POTEBQ6S5H4 581 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 ABHD15Q6UXT9 468 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 TLK2Q86UE8 772 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 CATSPER3Q86XQ3 398 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 IQUBQ8NA54 791 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 AFG1LQ8WV93 481 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 LENG1Q96BZ8 264 aaPredicted RBP20.25■□□□□ 0.83
SDC1-203ENST00000403076 DHX58Q96C10 678 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 GPR20Q99678 358 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 HSD17B14Q9BPX1 270 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 TUFT1Q9NNX1 390 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 GABBR1Q9UBS5 961 aa20.25■□□□□ 0.83
SDC1-203ENST00000403076 GNEQ9Y223 722 aaKnown RBP20.25■□□□□ 0.83
SDC1-203ENST00000403076 GSTTP1A0A1W2PQM5 241 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 KINO60870 393 aaKnown RBP20.24■□□□□ 0.83
SDC1-203ENST00000403076 NR1I2O75469 434 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 SLITRK3O94933 977 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 PLCG1P19174 1290 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 TCF7P36402 384 aaPredicted RBP20.24■□□□□ 0.83
SDC1-203ENST00000403076 STAT6P42226 847 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms