RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TSPY8P0CW00 308 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 GNAQP50148 359 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 STRN3Q13033 797 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TRIP13Q15645 432 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ANKRD40Q6AI12 368 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 MFN1Q8IWA4 741 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 MORC4Q8TE76 937 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TTC1Q99614 292 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TCHPQ9BT92 498 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TULP4Q9NRJ4 1543 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 RCCD1A6NED2 376 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ITGA6P23229 1130 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ITGB3BPQ13352 177 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 FAM83BQ5T0W9 1011 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 CCDC97Q96F63 343 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 HIC2Q96JB3 615 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 DCTN4Q9UJW0 460 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 UNC13BO14795 1591 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 FCER1AP12319 257 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 KLRC1P26715 233 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 TPP2P29144 1249 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 RFC5P40937 340 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 CDR2Q01850 454 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 MKRN4PQ13434 485 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ADAM9Q13443 819 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 KIAA0825Q8IV33 1275 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 SPICE1Q8N0Z3 855 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 IP6K1Q92551 441 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 DNAJC8O75937 253 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 PLEKHA8P1O95397 391 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 GNA11P29992 359 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 SERPINB6P35237 376 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 TOB1P50616 345 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ADSSL1Q8N142 457 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ANKRD35Q8N283 1001 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 USP38Q8NB14 1042 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 DTNBP1Q96EV8 351 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ZSCAN10Q96SZ4 725 aaPredicted RBP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 ABCF3Q9NUQ8 709 aa10.09□□□□□ -0.79
COL28A1-201ENST00000399429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.09□□□□□ -0.79
COL28A1-201ENST00000399429 PASKQ96RG2 1323 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 YEATS2Q9ULM3 1422 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 A0A0G2JND7 137 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 GAS8O95995 478 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 GHRP10912 638 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ZNF844Q08AG5 666 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 MESDQ14696 234 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 DZIP1Q86YF9 867 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 MAIP1Q8WWC4 291 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 FAXDC2Q96IV6 333 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 FAM210AQ96ND0 272 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 TMEM165Q9HC07 324 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ARMCX3Q9UH62 379 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 CDC42BPBQ9Y5S2 1711 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 AHCYL1O43865 530 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 LMNAP02545 664 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ESRRAP11474 423 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 XRCC5P13010 732 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 CA4P22748 312 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 FNTAP49354 379 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 RPS6KA3P51812 740 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 FKBP3Q00688 224 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ROR2Q01974 943 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 SLC29A2Q14542 456 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 PLS1Q14651 629 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 NONOQ15233 471 aaKnown RBP eCLIP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 TRADDQ15628 312 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 HIPK4Q8NE63 616 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 MCM9Q9NXL9 1143 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 CORO1CQ9ULV4 474 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 QRICH2Q9H0J4 1663 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 GSTA1P08263 222 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 TARSP26639 723 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 SARSP49591 514 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ICA1Q05084 483 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 TCIRG1Q13488 830 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 EXOC3L4Q17RC7 722 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 PPP1R21Q6ZMI0 780 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 MAP7D3Q8IWC1 876 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 PIP4K2CQ8TBX8 421 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 TATDN2Q93075 761 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 FAM129AQ9BZQ8 928 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 NT5C3AQ9H0P0 336 aa10.08□□□□□ -0.8
COL28A1-201ENST00000399429 REXO2Q9Y3B8 237 aaKnown RBP10.08□□□□□ -0.8
COL28A1-201ENST00000399429 ATP5HO75947 161 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 OR52Z1P0C646 297 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RPL13P26373 211 aaKnown RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RFC1P35251 1148 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ADD2P35612 726 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 LONRF1Q17RB8 773 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 LRRC36Q1X8D7 754 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ZFP69BQ9UJL9 534 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CHMP2BQ9UQN3 213 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SOS2Q07890 1332 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CFAP69A5D8W1 941 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 TRPA1O75762 1119 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 DCTN3O75935 186 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 COPB2P35606 906 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms