RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 DIS3Q9Y2L1 958 aaKnown RBP11.99□□□□□ -0.49
HPS4-202ENST00000398145 NRXN1Q9ULB1 1477 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 DLC1Q96QB1 1528 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 NSFP46459 744 aaKnown RBP11.99□□□□□ -0.49
HPS4-202ENST00000398145 MYO1EQ12965 1108 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 SNX1Q13596 522 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 ANKRD40Q6AI12 368 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 LRRC31Q6UY01 552 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 OTUD6AQ7L8S5 288 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 RHOT2Q8IXI1 618 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 ZNF473Q8WTR7 871 aaKnown RBP11.99□□□□□ -0.49
HPS4-202ENST00000398145 DYNLL2Q96FJ2 89 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.99□□□□□ -0.491e-9■■□□□ 14.2
HPS4-202ENST00000398145 PACSIN2Q9UNF0 486 aaPredicted RBP11.99□□□□□ -0.49
HPS4-202ENST00000398145 AXIN2Q9Y2T1 843 aa11.99□□□□□ -0.49
HPS4-202ENST00000398145 ERCC6L2Q5T890 1561 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 COL3A1P02461 1466 aaPredicted RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 OVOS2A0A0J9YW53 1432 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 OVOS2Q6IE36 1432 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 KIF3CO14782 793 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 KIF1CO43896 1103 aaKnown RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 NOL3O60936 208 aaKnown RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 CD19P15391 556 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 RFX5P48382 616 aaPredicted RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 GRIN1Q05586 938 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 TCP10Q12799 353 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 ISCA1Q9BUE6 129 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 USP40Q9NVE5 1235 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 ACSL3O95573 720 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 SKIP12755 728 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 TRIM28Q13263 835 aaKnown RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 AOC3Q16853 763 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 SYNE4Q8N205 404 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 GDAP1Q8TB36 358 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 CCSER1Q9C0I3 900 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 SLITRK6Q9H5Y7 841 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 FBXL5Q9UKA1 691 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 OPHN1O60890 802 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 GTF2IP78347 998 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 MECOMQ03112 1051 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 KCNH2Q12809 1159 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 BFSP1Q12934 665 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 STAG2Q8N3U4 1231 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 ATP2A3Q93084 1043 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 KIFC2Q96AC6 838 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 SAAL1Q96ER3 474 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 TRIM9Q9C026 710 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 MIF4GDA9UHW6 222 aaKnown RBP11.98□□□□□ -0.49
HPS4-202ENST00000398145 MFAP3P55082 362 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 MIER3Q7Z3K6 550 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 MXD3Q9BW11 206 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 AMNQ9BXJ7 453 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 ZNF446Q9NWS9 450 aa11.98□□□□□ -0.49
HPS4-202ENST00000398145 WDR17Q8IZU2 1322 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 CPS1P31327 1500 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 SSU72P8A0A1W2PR75 194 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 ZRANB2O95218 330 aaKnown RBP eCLIP11.97□□□□□ -0.49
HPS4-202ENST00000398145 MAPK4P31152 587 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 TMED2Q15363 201 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 HLFQ16534 295 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 MAP3K21Q5TCX8 1036 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 NBPF10Q6P3W6 841 aaKnown RBP11.97□□□□□ -0.49
HPS4-202ENST00000398145 MMGT1Q8N4V1 131 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 PDCD7Q8N8D1 485 aaKnown RBP11.97□□□□□ -0.49
HPS4-202ENST00000398145 PHF20Q9BVI0 1012 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 PITPNM3Q9BZ71 974 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 POLD4Q9HCU8 107 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 KCND1Q9NSA2 647 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 SCOCQ9UIL1 159 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 POTEMA6NI47 508 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 LRRIQ3A6PVS8 624 aaPredicted RBP11.97□□□□□ -0.49
HPS4-202ENST00000398145 NBPF26B4DH59 902 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 MEIS1O00470 390 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 FCER1AP12319 257 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 PDXDC1Q6P996 788 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 NBPF15Q8N660 670 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 FBXO41Q8TF61 875 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 NT5C1BQ96P26 610 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 COMMD10Q9Y6G5 202 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 ADGRB1O14514 1584 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 SYNGAP1Q96PV0 1343 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 CFAP73A6NFT4 308 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 PTK2Q05397 1052 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 ZYXQ15942 572 aaKnown RBP11.97□□□□□ -0.49
HPS4-202ENST00000398145 SLFN13Q68D06 897 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 SEPT14Q6ZU15 432 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 KAZALD1Q96I82 304 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 ADGRB2O60241 1585 aa11.97□□□□□ -0.49
HPS4-202ENST00000398145 PPRC1Q5VV67 1664 aaKnown RBP11.97□□□□□ -0.49
HPS4-202ENST00000398145 PNPLA7Q6ZV29 1317 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 PPP1R3GB7ZBB8 358 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 DAPK3O43293 454 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 RHOBTB3O94955 611 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 DLATP10515 647 aaKnown RBP11.96□□□□□ -0.49
HPS4-202ENST00000398145 HNRNPH1P31943 449 aaKnown RBP11.96□□□□□ -0.49
HPS4-202ENST00000398145 PMS2P54278 862 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 SEPT6Q14141 434 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 CCDC93Q567U6 631 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 SH2D4BQ5SQS7 431 aa11.96□□□□□ -0.49
HPS4-202ENST00000398145 AGXT2Q9BYV1 514 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms