RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SNX1Q13596 522 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 FLCNQ8NFG4 579 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ANKFY1Q9P2R3 1169 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 CCPG1Q9ULG6 757 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 GOLGA8CPA6NN73 597 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 KRT75O95678 551 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 SAT1P21673 171 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 PLCB4Q15147 1175 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 PI4K2BQ8TCG2 481 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 SUGCTQ9HAC7 445 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ATP7BP35670 1465 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 PTCH1Q13635 1447 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ANO9A1A5B4 782 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 TTLL1O95922 423 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 KRT1P04264 644 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 PLCG1P19174 1290 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 KMT5BQ4FZB7 885 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 FAM160B1Q5W0V3 765 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 DCAF15Q66K64 600 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 SH3GL2Q99962 352 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 LEMD3Q9Y2U8 911 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 EXOC1LA0A1B0GW35 172 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 SLCO1A2P46721 670 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 CDC37Q16543 378 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 RESP18Q5W5W9 173 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ADAM21Q9UKJ8 722 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ANGPTL2Q9UKU9 493 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ADGBQ8N7X0 1667 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 KCNA4P22459 653 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 DISC1Q9NRI5 854 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ZSWIM5Q9P217 1185 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 SRGAP2BP0DMP2 458 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 TFDP1Q14186 410 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ALKBH5Q6P6C2 394 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ZNF577Q9BSK1 485 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 DIS3Q9Y2L1 958 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 KDM5CP41229 1560 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 MXI1P50539 228 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 KPNA2P52292 529 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 DNAJC24Q6P3W2 148 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 RHOT2Q8IXI1 618 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 BPIFA3Q9BQP9 254 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 TRIM56Q9BRZ2 755 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 OSBPL5Q9H0X9 879 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 MID2Q9UJV3 735 aa11.06□□□□□ -0.64
LIMCH1-203ENST00000396595 ABCA5Q8WWZ7 1642 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 hCG_2014768A0A024R1R8 64 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 MYO1CO00159 1063 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 OATP04181 439 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 ITKQ08881 620 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 CC2D1AQ6P1N0 951 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 RAPH1Q70E73 1250 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 TADA2BQ86TJ2 420 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PAWRQ96IZ0 340 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PUS7LQ9H0K6 701 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 FGFR1OP2Q9NVK5 253 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 UTP6Q9NYH9 597 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 NFU1Q9UMS0 254 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 RPAP1Q9BWH6 1393 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 CLIC2O15247 247 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 XPOTO43592 962 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PTPREP23469 700 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 IL6STP40189 918 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 SLC7A5Q01650 507 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PTPN12Q05209 780 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 ADCY1Q08828 1119 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 NBPF20Q3BBV1 942 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 RAB44Q7Z6P3 723 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 CEP19Q96LK0 163 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 DISP1Q96F81 1524 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PODXLO00592 558 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 SCNN1DP51172 638 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 ARHGEF25Q86VW2 580 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 KIAA0825Q8IV33 1275 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 ZNF579Q8NAF0 562 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 XDHP47989 1333 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 MAPK13O15264 365 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PLA2G4BP0C869 781 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 CDC25AP30304 524 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 LCORLQ8N3X6 602 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PPWD1Q96BP3 646 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 KMT5AQ9NQR1 393 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 POLE3Q9NRF9 147 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 NOP53Q9NZM5 478 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 PLEKHG1Q9ULL1 1385 aa11.05□□□□□ -0.64
LIMCH1-203ENST00000396595 TLR3O15455 904 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CA4P22748 312 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ALCAMQ13740 583 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 SLC7A3Q8WY07 619 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PDLIM2Q96JY6 352 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PIGSQ96S52 555 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PARVGQ9HBI0 331 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 UBE2TQ9NPD8 197 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 DIABLOQ9NR28 239 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 SLC5A4Q9NY91 659 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CSADQ9Y600 493 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 IPO5O00410 1097 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ESRRAP11474 423 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 DYNLL1P63167 89 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms