RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 LRCH2Q5VUJ6 765 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 NIPA1Q7RTP0 329 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 ZNF784Q8NCA9 323 aaPredicted RBP25.58■■□□□ 1.69
VPS16-201ENST00000380443 WDR24Q96S15 920 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 FAM184BQ9ULE4 1060 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 MNS1Q8NEH6 495 aa25.58■■□□□ 1.68
VPS16-201ENST00000380443 WDR18Q9BV38 432 aa25.58■■□□□ 1.68
VPS16-201ENST00000380443 SIK3Q9Y2K2 1263 aa25.58■■□□□ 1.68
VPS16-201ENST00000380443 RASSF10A6NK89 507 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 BCRP11274 1271 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 USP14P54578 494 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 DCAF15Q66K64 600 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 WDR59Q6PJI9 974 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 CYP2W1Q8TAV3 490 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 NEK9Q8TD19 979 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 SCFD1Q8WVM8 642 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 TBC1D5Q92609 795 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 RIT2Q99578 217 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 KCTD10Q9H3F6 313 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 HAUS4Q9H6D7 363 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 LZTFL1Q9NQ48 299 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 KCND2Q9NZV8 630 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 CCPG1Q9ULG6 757 aa25.57■■□□□ 1.68
VPS16-201ENST00000380443 ZNF526Q8TF50 670 aaPredicted RBP25.56■■□□□ 1.68
VPS16-201ENST00000380443 CHP1Q99653 195 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 GLIS2Q9BZE0 524 aaPredicted RBP25.56■■□□□ 1.68
VPS16-201ENST00000380443 GPBP1L1Q9HC44 474 aaPredicted RBP25.56■■□□□ 1.68
VPS16-201ENST00000380443 EFCAB8A8MWE9 144 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 TAL1P17542 331 aaPredicted RBP25.56■■□□□ 1.68
VPS16-201ENST00000380443 TUBB4BP68371 445 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 PPP2R3AQ06190 1150 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 PABPC4Q13310 644 aaKnown RBP eCLIP25.56■■□□□ 1.68
VPS16-201ENST00000380443 BMT2Q1RMZ1 405 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 CCDC40Q4G0X9 1142 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 NUCKS1Q9H1E3 243 aaKnown RBP25.56■■□□□ 1.68
VPS16-201ENST00000380443 FBXO28Q9NVF7 368 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 TRAF3IP3Q9Y228 551 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 MRFAP1Q9Y605 127 aa25.56■■□□□ 1.68
VPS16-201ENST00000380443 EIF3CLB5ME19 914 aaKnown RBP25.55■■□□□ 1.68
VPS16-201ENST00000380443 FANCGO15287 622 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 GAS7O60861 476 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 IPO7O95373 1038 aaKnown RBP25.55■■□□□ 1.68
VPS16-201ENST00000380443 INPP5BP32019 993 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 PSMC6P62333 389 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 EPHA7Q15375 998 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 EPM2AIP1Q7L775 607 aaPredicted RBP25.55■■□□□ 1.68
VPS16-201ENST00000380443 GLIS3Q8NEA6 775 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 ACRBPQ8NEB7 543 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 EEF2KMTQ96G04 330 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 EIF3CQ99613 913 aaKnown RBP25.55■■□□□ 1.68
VPS16-201ENST00000380443 RPTORQ8N122 1335 aa25.55■■□□□ 1.68
VPS16-201ENST00000380443 NPHP3-ACAD11A0A0J9YXS1 232 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 EML1O00423 815 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 CETN3O15182 167 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 TBCAO75347 108 aaKnown RBP25.54■■□□□ 1.68
VPS16-201ENST00000380443 UIMC1Q96RL1 719 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 REEP2Q9BRK0 252 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 MXRA8Q9BRK3 442 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 TEKT3Q9BXF9 490 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 AGPAT5Q9NUQ2 364 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 PLAGL2Q9UPG8 496 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 ZNF536O15090 1300 aa25.54■■□□□ 1.68
VPS16-201ENST00000380443 PDXKO00764 312 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 CALUO43852 315 aaPredicted RBP25.53■■□□□ 1.68
VPS16-201ENST00000380443 GMPSP49915 693 aaPredicted RBP25.53■■□□□ 1.68
VPS16-201ENST00000380443 MICALL2Q8IY33 904 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 EHBP1Q8NDI1 1231 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 NACC1Q96RE7 527 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 ZNF577Q9BSK1 485 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 SLC38A10Q9HBR0 1119 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 OLFML3Q9NRN5 406 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 SLITRK3O94933 977 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 ARHGAP25P42331 645 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 KNOP1Q1ED39 458 aaKnown RBP25.53■■□□□ 1.68
VPS16-201ENST00000380443 B3GNT9Q6UX72 402 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 TRIM59Q8IWR1 403 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 UBXN4Q92575 508 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 BHMT2Q9H2M3 363 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.53■■□□□ 1.68
VPS16-201ENST00000380443 SEL1LQ9UBV2 794 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 CNOT7Q9UIV1 285 aaKnown RBP25.53■■□□□ 1.68
VPS16-201ENST00000380443 SMCHD1A6NHR9 2005 aa25.53■■□□□ 1.68
VPS16-201ENST00000380443 CTAGE9A4FU28 777 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 ZNF569Q5MCW4 686 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 GPC2Q8N158 579 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 NEK11Q8NG66 645 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 CCDC94Q9BW85 323 aaPredicted RBP25.52■■□□□ 1.68
VPS16-201ENST00000380443 ZHX3Q9H4I2 956 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 AS3MTQ9HBK9 375 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 TBC1D7Q9P0N9 293 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 ZNF541Q9H0D2 1346 aa25.52■■□□□ 1.68
VPS16-201ENST00000380443 SHTN1A0MZ66 631 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 ADAM9Q13443 819 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 RINT1Q6NUQ1 792 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 FRMD5Q7Z6J6 570 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 CLEC4DQ8WXI8 215 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 NHEJ1Q9H9Q4 299 aaPredicted RBP25.51■■□□□ 1.67
VPS16-201ENST00000380443 HACL1Q9UJ83 578 aa25.51■■□□□ 1.67
VPS16-201ENST00000380443 EIF3DO15371 548 aaKnown RBP eCLIP25.51■■□□□ 1.67
VPS16-201ENST00000380443 ZBED4O75132 1171 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms