RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 UPK3BL1B0FP48 263 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 UPK3BL2E5RIL1 263 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 CYP11A1P05108 521 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 VEGFAP15692 232 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 ABCD1P33897 745 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 EPHA4P54764 986 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 GRIN2CQ14957 1233 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 SAFBQ15424 915 aaKnown RBP eCLIP4.44□□□□□ -1.7
MCF2-203ENST00000370576 MEI1Q5TIA1 1274 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 STYK1Q6J9G0 422 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 MTHFD1LQ6UB35 978 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 RBM43Q6ZSC3 357 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 C3orf67Q6ZVT6 689 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 LCA5Q86VQ0 697 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 SEPT12Q8IYM1 358 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 FLAD1Q8NFF5 587 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 RIN3Q8TB24 985 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 AFAP1L1Q8TED9 768 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 RPGRQ92834 1020 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 JAKMIP2Q96AA8 810 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 KIAA1683Q9H0B3 1180 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 SEMA4AQ9H3S1 761 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 AGO4Q9HCK5 861 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 TCF7L2Q9NQB0 619 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 PDRG1Q9NUG6 133 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TCP11L1Q9NUJ3 509 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.44□□□□□ -1.7
MCF2-203ENST00000370576 SLC22A3O75751 556 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 GFPT2O94808 682 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 NEFHP12036 1026 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 ZAP70P43403 619 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 MAPK8P45983 427 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 CCT5P48643 541 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 PIP4K2BP78356 416 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TFCP2Q12800 502 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 CHAF1AQ13111 956 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 CT47A1Q5JQC4 288 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 SLC4A10Q6U841 1118 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 SPATC1Q76KD6 591 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TDRD7Q8NHU6 1098 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 LPIN2Q92539 896 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 N4BP2L2Q92802 583 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 HLA-CQ95604 372 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TREX2Q9BQ50 279 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 RIOK1Q9BRS2 568 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 AP1M1Q9BXS5 423 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 MTFR1LQ9H019 292 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TOPORSQ9NS56 1045 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 QPCTLQ9NXS2 382 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TRPC6Q9Y210 931 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 STK36Q9NRP7 1315 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 IGKV6D-41A0A0C4DH26 115 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 VGLL3A8MV65 326 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 SMAD7O15105 426 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 IFIT2P09913 472 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 ZKSCAN1P17029 563 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 BPIP17213 487 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 EIF1AXP47813 144 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 ERVK-21P61565 698 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TOB2Q14106 344 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 TBC1D9BQ66K14 1250 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 KIF6Q6ZMV9 814 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TMTC1Q8IUR5 882 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 MB21D2Q8IYB1 491 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 POF1BQ8WVV4 589 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 KCTD13Q8WZ19 329 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 TBC1D31Q96DN5 1066 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 UTP14AQ9BVJ6 771 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 PALD1Q9ULE6 856 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 RRP15Q9Y3B9 282 aaKnown RBP4.44□□□□□ -1.7
MCF2-203ENST00000370576 KAT6BQ8WYB5 2073 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 PPEF1O14829 653 aaPredicted RBP4.43□□□□□ -1.7
MCF2-203ENST00000370576 CTNND1O60716 968 aaKnown RBP4.43□□□□□ -1.7
MCF2-203ENST00000370576 DDR1Q08345 913 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 DHCR24Q15392 516 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 TMEM67Q5HYA8 995 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 PERM1Q5SV97 790 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 SWT1Q5T5J6 900 aaKnown RBP4.43□□□□□ -1.7
MCF2-203ENST00000370576 SGMS1Q86VZ5 419 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 PASD1Q8IV76 773 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 SLITRK4Q8IW52 837 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 TPCN2Q8NHX9 752 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 CENPIQ92674 756 aaPredicted RBP4.43□□□□□ -1.7
MCF2-203ENST00000370576 C7orf25Q9BPX7 421 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 YIPF4Q9BSR8 244 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 GREM2Q9H772 168 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 ZMAT5Q9UDW3 170 aaKnown RBP4.43□□□□□ -1.7
MCF2-203ENST00000370576 ZNF180Q9UJW8 692 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 DNAJC25-GNG10A0A024R161 153 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 GPR75-ASB3A0A0A6YYF3 556 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 C17orf113A0A1B0GUU1 675 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 REC8O95072 547 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 BAG2O95816 211 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 UQCRFS1P1P0C7P4 283 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 KCNA3P22001 575 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 MCAMP43121 646 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 CLCN2P51788 898 aa4.43□□□□□ -1.7
MCF2-203ENST00000370576 NSUN2Q08J23 767 aaKnown RBP eCLIP4.43□□□□□ -1.7
MCF2-203ENST00000370576 MTMR2Q13614 643 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms