RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RIOX1Q9H6W3 641 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 THRAP3Q9Y2W1 955 aaKnown RBP13.34□□□□□ -0.27
CLIP3-201ENST00000360535 KIAA1551Q9HCM1 1747 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 GPR75-ASB3A0A0A6YYF3 556 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 GOLGA8KD6RF30 607 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 BACH1O14867 736 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 DOK7Q18PE1 504 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 PRR16Q569H4 304 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CEP85LQ5SZL2 805 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 GJB7Q6PEY0 223 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CASKIN2Q8WXE0 1202 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 RIC8AQ9NPQ8 531 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 LUC7LQ9NQ29 371 aaKnown RBP13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CEP72Q9P209 647 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 ATP6V0A2Q9Y487 856 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 RAD51CO43502 376 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 SEC24CP53992 1094 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 PSMC6P62333 389 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 PPM1EQ8WY54 764 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 SEPT11Q9NVA2 429 aaKnown RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 BCS1LQ9Y276 419 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 PCDHB13Q9Y5F0 798 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 LAMB1P07942 1786 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 G3V3G9 751 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 IBSPP21815 317 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 MRPL12P52815 198 aaKnown RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 PRPF4BQ13523 1007 aaKnown RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 RNF187Q5TA31 235 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 DCAF8Q5TAQ9 597 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 EMBQ6PCB8 327 aa13.33□□□□□ -0.28
CLIP3-201ENST00000360535 TRMT1LQ7Z2T5 733 aaKnown RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 DDX4Q9NQI0 724 aaKnown RBP13.33□□□□□ -0.28
CLIP3-201ENST00000360535 H0YHG0 523 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 CETN3O15182 167 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 EIF3HO15372 352 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PTK2Q05397 1052 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 RPS6KA1Q15418 735 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 ODF2Q5BJF6 829 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 FBXW10Q5XX13 1052 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 SCFD1Q8WVM8 642 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 RNPC3Q96LT9 517 aaKnown RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PPANQ9NQ55 473 aaKnown RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 POLLQ9UGP5 575 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 DAGLAQ9Y4D2 1042 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PNMA6FA0A0J9YX94 578 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PLCG2P16885 1265 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PAK2Q13177 524 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 ASTE1Q2TB18 679 aaPredicted RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 DDX47Q9H0S4 455 aaKnown RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 USP40Q9NVE5 1235 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PCDHA1Q9Y5I3 950 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 COL14A1Q05707 1796 aaKnown RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 MED24O75448 989 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 ERLIN2O94905 339 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PDIA5Q14554 519 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 SLC18A3Q16572 532 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 PAXIP1Q6ZW49 1069 aaPredicted RBP13.32□□□□□ -0.28
CLIP3-201ENST00000360535 TADA2BQ86TJ2 420 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 LRRC27Q9C0I9 530 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 HDAC9Q9UKV0 1011 aa13.32□□□□□ -0.28
CLIP3-201ENST00000360535 SSU72P8A0A1W2PR75 194 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 GRID2IPA4D2P6 1211 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ZNF233A6NK53 670 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 RSPH10B2B2RC85 870 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 TTLL1O95922 423 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 RSPH10BP0C881 870 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 RBM5P52756 815 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ASPRV1Q53RT3 343 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ROBO3Q96MS0 1386 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 PRLRP16471 622 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ZNF543Q08ER8 600 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 NAB2Q15742 525 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 UBLCP1Q8WVY7 318 aaPredicted RBP13.31□□□□□ -0.28
CLIP3-201ENST00000360535 PLAAQ9Y263 795 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 EP400Q96L91 3159 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ATP2C2O75185 946 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 ABCB4P21439 1286 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 KCNA1Q09470 495 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 PSMD2Q13200 908 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 TMEM119Q4V9L6 283 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 PRR5LQ6MZQ0 368 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 SFR1Q86XK3 245 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 KSR1Q8IVT5 923 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 IQCDQ96DY2 449 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 DPH5Q9H2P9 285 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 SERPINB13Q9UIV8 391 aa13.31□□□□□ -0.28
CLIP3-201ENST00000360535 CNTNAP4Q9C0A0 1308 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 IRS2Q9Y4H2 1338 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 PJA2O43164 708 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 CHMP2AO43633 222 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 LCA5LO95447 670 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 MYBP10242 640 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 CYP11B2P19099 503 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 INPP5BP32019 993 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 CASP4P49662 377 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 SLC20A2Q08357 652 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 PLS1Q14651 629 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 ALS2CLQ60I27 953 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 ZNF571Q7Z3V5 609 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms