RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 KIF24Q5T7B8 1368 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 USP6P35125 1406 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 NEMP1O14524 444 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 RAB44Q7Z6P3 723 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 AFG1LQ8WV93 481 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 RSRC1Q96IZ7 334 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 TTC25Q96NG3 672 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 NVLO15381 856 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 KRT10P13645 584 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 GCFC2P16383 781 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 CFAP36Q96G28 342 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 TTC1Q99614 292 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 ATG3Q9NT62 314 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 KDM5CP41229 1560 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 GPSM2P81274 684 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 MAP4K1Q92918 833 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 AIFM3Q96NN9 605 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 IGSF1Q8N6C5 1336 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 ARHGEF37A1IGU5 675 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 RNF40O75150 1001 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 BAG2O95816 211 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 PSMD2Q13200 908 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 MINPP1Q9UNW1 487 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 NMT2O60551 498 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 BRD1O95696 1058 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PMLP29590 882 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 MCAMP43121 646 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 FASTKD5Q7L8L6 764 aaKnown RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 EMILIN3Q9NT22 766 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PTPN12Q05209 780 aaKnown RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 SLC44A5Q8NCS7 719 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 EXT2Q93063 718 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 P2RX5Q93086 422 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 RPGRIP1Q96KN7 1286 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PLEKHF1Q96S99 279 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 BHMT2Q9H2M3 363 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PPP2R2CQ9Y2T4 447 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 NPC1L1Q9UHC9 1359 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 HP1BP3Q5SSJ5 553 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 MFSD14CQ5VZR4 134 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 CXCR5P32302 372 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PCDHA6Q9UN73 950 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 SCAF8Q9UPN6 1271 aaKnown RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PCDHA8Q9Y5H6 950 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PCDHA5Q9Y5H7 936 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 AK8Q96MA6 479 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 SH2B2O14492 632 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 HS1BP3Q53T59 392 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 GPR108Q9NPR9 543 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 HACD3Q9P035 362 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 EPN1Q9Y6I3 576 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-201ENST00000359947 PASKQ96RG2 1323 aa16.85■□□□□ 0.29
PTPRF-201ENST00000359947 GPC4O75487 556 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 MMP1P03956 469 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 CYP4F22Q6NT55 531 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 CELF1Q92879 486 aaKnown RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 ELP3Q9H9T3 547 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L10C9JJH3 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 TTC19Q6DKK2 380 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 GUCY2DQ02846 1103 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 URGCPQ8TCY9 931 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 DACT3Q96B18 629 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 SGO2Q562F6 1265 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 APOBEC3FQ8IUX4 373 aaKnown RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 TMEM106CQ9BVX2 250 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 COL15A1P39059 1388 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L15C9J2P7 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L13C9JLJ4 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L11C9JVI0 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L18D6R9N7 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L22D6RA61 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L17D6RBQ6 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L19D6RCP7 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L20D6RJB6 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L24Q0WX57 530 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L6PQ6QN14 398 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 NARFQ9UHQ1 456 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 GBP7Q8N8V2 638 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 OGFRQ9NZT2 677 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 MXI1P50539 228 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 TRIML1Q8N9V2 468 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 GJD4Q96KN9 370 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-201ENST00000359947 CD209Q9NNX6 404 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 PCDHB6Q9Y5E3 794 aa16.84■□□□□ 0.29
PTPRF-201ENST00000359947 EEF1GP26641 437 aaKnown RBP16.83■□□□□ 0.29
PTPRF-201ENST00000359947 INPP5BP32019 993 aa16.83■□□□□ 0.29
PTPRF-201ENST00000359947 ACCSLQ4AC99 568 aa16.83■□□□□ 0.29
PTPRF-201ENST00000359947 PASD1Q8IV76 773 aa16.83■□□□□ 0.29
PTPRF-201ENST00000359947 MMTAG2Q9BU76 263 aaKnown RBP16.83■□□□□ 0.29
PTPRF-201ENST00000359947 ABCC12Q96J65 1359 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 MIPOL1Q8TD10 442 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 F5H423 210 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-201ENST00000359947 FCER1AP12319 257 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 SPATA33Q96N06 139 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 TACO1Q9BSH4 297 aaKnown RBP16.83■□□□□ 0.28
PTPRF-201ENST00000359947 CLDN3O15551 220 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 CIITAP33076 1130 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 SZRD1Q7Z422 152 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 EFCAB13Q8IY85 973 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms