RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CALML4Q96GE6 196 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 TNMDQ9H2S6 317 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 DNAJC25-GNG10A0A024R161 153 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 TNFAIP2Q03169 654 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 TTLL4Q14679 1199 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 OLFML2BQ68BL8 750 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 NOC3LQ8WTT2 800 aaKnown RBP10.33□□□□□ -0.76
USP4-202ENST00000351842 TRAPPC12Q8WVT3 735 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 MTMR9Q96QG7 549 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 APBA2Q99767 749 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 EIF2AK1Q9BQI3 630 aaKnown RBP10.33□□□□□ -0.76
USP4-202ENST00000351842 LXNQ9BS40 222 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 SLC9A2Q9UBY0 812 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 GJD2Q9UKL4 321 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 UBIAD1Q9Y5Z9 338 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 LOC285556D6RIA3 1793 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 PARP14Q460N5 1801 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 CDH23Q9H251 3354 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 B4DLN1 442 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 ACTR2P61160 394 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 L1TD1Q5T7N2 865 aaKnown RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 PDXDC2PQ6P474 469 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SMYD4Q8IYR2 804 aaPredicted RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 CEP57L1Q8IYX8 460 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 OR6J1Q8NGC5 347 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 INPP4AQ96PE3 977 aaPredicted RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 BHMT2Q9H2M3 363 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SEPT9Q9UHD8 586 aaPredicted RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 TRPC6Q9Y210 931 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 ADGRA2Q96PE1 1338 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SMPD1P17405 629 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 COPB2P35606 906 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 TCF7P36402 384 aaPredicted RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 MTFR1Q15390 333 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 MTERF2Q49AM1 385 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SLC9C1Q4G0N8 1177 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 GNASQ5JWF2 1037 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 KLHL10Q6JEL2 608 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 OTOP1Q7RTM1 612 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 CATSPER3Q86XQ3 398 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SLFN12Q8IYM2 578 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 DNAJC5GQ8N7S2 189 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SCFD2Q8WU76 684 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 NUP62CLQ9H1M0 184 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 SUGCTQ9HAC7 445 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 KCNMB3Q9NPA1 279 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 WRAP73Q9P2S5 460 aaPredicted RBP10.32□□□□□ -0.76
USP4-202ENST00000351842 SRRDQ9UH36 339 aa10.32□□□□□ -0.76
USP4-202ENST00000351842 USO1O60763 962 aaKnown RBP10.31□□□□□ -0.76
USP4-202ENST00000351842 PPP6R2O75170 966 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 BMP15O95972 392 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 MYL3P08590 195 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 PRR29P0C7W0 189 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 MORN1Q5T089 497 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 MFSD14CQ5VZR4 134 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 CCDC60Q8IWA6 550 aaPredicted RBP10.31□□□□□ -0.76
USP4-202ENST00000351842 CRYGNQ8WXF5 182 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 SOCS4Q8WXH5 440 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 WBP1LQ9NX94 342 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 KIAA1217Q5T5P2 1943 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 SETQ01105 290 aaPredicted RBP10.31□□□□□ -0.76
USP4-202ENST00000351842 FAM160A1Q05DH4 1040 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 CACNB2Q08289 660 aaPredicted RBP10.31□□□□□ -0.76
USP4-202ENST00000351842 ERO1AQ96HE7 468 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 IWS1Q96ST2 819 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 ABHD16BQ9H3Z7 469 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 INHAP05111 366 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 KCNA2P16389 499 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 CMA1P23946 247 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 HOXD10P28358 340 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 CXCL17Q6UXB2 119 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 METTL13Q8N6R0 699 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 LRRC15Q8TF66 581 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 AZI2Q9H6S1 392 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 CCDC39Q9UFE4 941 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 RPTORQ8N122 1335 aa10.31□□□□□ -0.76
USP4-202ENST00000351842 MYO9BQ13459 2157 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 MYADML2A6NDP7 307 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 PSMD10O75832 226 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 TMEM62Q0P6H9 643 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 Q4G0T1 1027 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 XKR9Q5GH70 373 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 TLK2Q86UE8 772 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 ZNF579Q8NAF0 562 aaKnown RBP10.3□□□□□ -0.76
USP4-202ENST00000351842 RGS22Q8NE09 1264 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 ERMNQ8TAM6 284 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 MMTAG2Q9BU76 263 aaKnown RBP10.3□□□□□ -0.76
USP4-202ENST00000351842 RNF208Q9H0X6 261 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 DDX41Q9UJV9 622 aaKnown RBP10.3□□□□□ -0.76
USP4-202ENST00000351842 CYP3A4P08684 503 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 GRK4P32298 578 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 CIITAP33076 1130 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 ASIC1P78348 528 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 RESP18Q5W5W9 173 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 TRPV1Q8NER1 839 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 FAM20AQ96MK3 541 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 DEFB118Q96PH6 123 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 VAV3Q9UKW4 847 aa10.3□□□□□ -0.76
USP4-202ENST00000351842 WDR64B1ANS9 1081 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 SPATA31C2B4DYI2 1134 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms