RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FAM107AO95990 144 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 CACNB1Q02641 598 aaPredicted RBP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 SOGA3Q5TF21 947 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 SNX29Q8TEQ0 813 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 CYFIP2Q96F07 1278 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 TSG101Q99816 390 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 TMBIM4Q9HC24 238 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 ATP6V0A2Q9Y487 856 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 KIAA1551Q9HCM1 1747 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 GOLGA6L10A6NI86 522 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 WDR66Q8TBY9 1149 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 NEUROG2Q9H2A3 272 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 FAM170AA1A519 330 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 ATP2C2O75185 946 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 UAP1Q16222 522 aaPredicted RBP24.56■■□□□ 1.52
TRIM28-202ENST00000341753 QPCTQ16769 361 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 SPATS2Q86XZ4 545 aaKnown RBP24.56■■□□□ 1.52
TRIM28-202ENST00000341753 RPGRQ92834 1020 aaKnown RBP24.56■■□□□ 1.52
TRIM28-202ENST00000341753 TAF1DQ9H5J8 278 aaPredicted RBP24.56■■□□□ 1.52
TRIM28-202ENST00000341753 COL4A3BPQ9Y5P4 624 aa24.56■■□□□ 1.52
TRIM28-202ENST00000341753 PVALEFA0A1B0GWK0 134 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 HSPA9P38646 679 aaKnown RBP24.55■■□□□ 1.52
TRIM28-202ENST00000341753 ACTN3Q08043 901 aaPredicted RBP24.55■■□□□ 1.52
TRIM28-202ENST00000341753 KLHL30Q0D2K2 578 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 ECM1Q16610 540 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 VCPKMTQ9H867 229 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 CEP104O60308 925 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 ECHS1P30084 290 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 FLT3P36888 993 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 TNNC1P63316 161 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 SLC18A3Q16572 532 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 RAD54LQ92698 747 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 TAF4BQ92750 862 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 PCDHGC5Q9Y5F6 944 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 ZNF831Q5JPB2 1677 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 GCOM1H8Y6P7 765 aaPredicted RBP24.55■■□□□ 1.52
TRIM28-202ENST00000341753 MYZAPP0CAP1 466 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 BTDP43251 543 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 MYOCDQ8IZQ8 938 aa24.55■■□□□ 1.52
TRIM28-202ENST00000341753 REXO1Q8N1G1 1221 aaKnown RBP24.55■■□□□ 1.52
TRIM28-202ENST00000341753 CCDC88AQ3V6T2 1871 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 CTNNA1P35221 906 aaKnown RBP24.54■■□□□ 1.52
TRIM28-202ENST00000341753 KLC4Q9NSK0 619 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 LEMD3Q9Y2U8 911 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 LAMB1P07942 1786 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 GNA11P29992 359 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 SF3A3Q12874 501 aaKnown RBP eCLIP24.54■■□□□ 1.527e-7■■■■□ 24.6
TRIM28-202ENST00000341753 ODF2Q5BJF6 829 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 ZNF804AQ7Z570 1209 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 ANKS1AQ92625 1134 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 ZKSCAN4Q969J2 545 aaPredicted RBP24.54■■□□□ 1.52
TRIM28-202ENST00000341753 DDX47Q9H0S4 455 aaKnown RBP24.54■■□□□ 1.52
TRIM28-202ENST00000341753 LRRC4CQ9HCJ2 640 aa24.54■■□□□ 1.52
TRIM28-202ENST00000341753 DCDC2CA8MYV0 355 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 ACTN1P12814 892 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 UBLCP1Q8WVY7 318 aaPredicted RBP24.53■■□□□ 1.52
TRIM28-202ENST00000341753 COA7Q96BR5 231 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 MTMR9Q96QG7 549 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 RTFDC1Q9BY42 306 aaPredicted RBP24.53■■□□□ 1.52
TRIM28-202ENST00000341753 CD209Q9NNX6 404 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 SLC40A1Q9NP59 571 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 ZNF844Q08AG5 666 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 COASYQ13057 564 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 RPS6KA1Q15418 735 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 EMC10Q5UCC4 262 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 PAGR1Q9BTK6 254 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 STK17AQ9UEE5 414 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 SEC63Q9UGP8 760 aaKnown RBP24.53■■□□□ 1.52
TRIM28-202ENST00000341753 DDX20Q9UHI6 824 aaKnown RBP24.53■■□□□ 1.52
TRIM28-202ENST00000341753 SBF2Q86WG5 1849 aa24.53■■□□□ 1.52
TRIM28-202ENST00000341753 ABCB11O95342 1321 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 FKBP3Q00688 224 aaKnown RBP24.52■■□□□ 1.52
TRIM28-202ENST00000341753 YTHDF3Q7Z739 585 aaKnown RBP24.52■■□□□ 1.52
TRIM28-202ENST00000341753 CCDC114Q96M63 670 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 ISCUQ9H1K1 167 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 LUC7LQ9NQ29 371 aaKnown RBP24.52■■□□□ 1.52
TRIM28-202ENST00000341753 PLCB1Q9NQ66 1216 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 CNOT8Q9UFF9 292 aaKnown RBP24.52■■□□□ 1.52
TRIM28-202ENST00000341753 RASA1P20936 1047 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 CCDC121Q6ZUS5 278 aa24.52■■□□□ 1.52
TRIM28-202ENST00000341753 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.52■■□□□ 1.521e-7■□□□□ 10.5
TRIM28-202ENST00000341753 NPHP3-ACAD11A0A0J9YXS1 232 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 RGL2O15211 777 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 BAG3O95817 575 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 ASIC2Q16515 512 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 FBXL5Q9UKA1 691 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 FRMPD2Q68DX3 1309 aaPredicted RBP24.51■■□□□ 1.51
TRIM28-202ENST00000341753 H0YGN5 161 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 MYBP10242 640 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 TMEM266Q2M3C6 531 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 MEX3CQ5U5Q3 659 aaKnown RBP24.51■■□□□ 1.51
TRIM28-202ENST00000341753 C6orf89Q6UWU4 347 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 GJD4Q96KN9 370 aaPredicted RBP24.51■■□□□ 1.51
TRIM28-202ENST00000341753 EDEM3Q9BZQ6 932 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 NFS1Q9Y697 457 aa24.51■■□□□ 1.51
TRIM28-202ENST00000341753 GMNCA6NCL1 334 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 EDIL3O43854 480 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 SERPINB2P05120 415 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 ITGA4P13612 1032 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 ZCWPW2Q504Y3 356 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms