RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 STAT2P52630 851 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 LETM2Q2VYF4 491 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 RASGRP2Q7LDG7 609 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 FBXO11Q86XK2 927 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 DCAF4Q8WV16 495 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 ALS2CR12Q96Q35 445 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 MMP1P03956 469 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 SMTNP53814 917 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 ZNF280AP59817 542 aaPredicted RBP11.97□□□□□ -0.49
LSM3-201ENST00000306024 ZNF543Q08ER8 600 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 ARMC9Q7Z3E5 817 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 TMEM139Q8IV31 216 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 PAIP2Q9BPZ3 127 aaKnown RBP11.97□□□□□ -0.49
LSM3-201ENST00000306024 HAUS2Q9NVX0 235 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 BIN2Q9UBW5 565 aaPredicted RBP11.97□□□□□ -0.49
LSM3-201ENST00000306024 TUBE1Q9UJT0 475 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 FZD1Q9UP38 647 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 CTNND2Q9UQB3 1225 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 USP17L10C9JJH3 530 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 ECE1P42892 770 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 SEC24CP53992 1094 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 FMR1Q06787 632 aaKnown RBP eCLIP11.97□□□□□ -0.49
LSM3-201ENST00000306024 IFFO1Q0D2I5 559 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 SYDE2Q5VT97 1194 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 CCNI2Q6ZMN8 369 aaPredicted RBP11.97□□□□□ -0.49
LSM3-201ENST00000306024 TAX1BP1Q86VP1 789 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 ZNF473Q8WTR7 871 aaKnown RBP11.97□□□□□ -0.49
LSM3-201ENST00000306024 ZBTB10Q96DT7 871 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 MCM8Q9UJA3 840 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 CFBP00751 764 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 EPHB4P54760 987 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 PFKFB3Q16875 520 aaPredicted RBP11.96□□□□□ -0.49
LSM3-201ENST00000306024 SHROOM1Q2M3G4 852 aaPredicted RBP11.96□□□□□ -0.49
LSM3-201ENST00000306024 GADL1Q6ZQY3 521 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 MTMR14Q8NCE2 650 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 DYDC1Q8WWB3 177 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 AMNQ9BXJ7 453 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 ATP1A1P05023 1023 aaKnown RBP11.96□□□□□ -0.49
LSM3-201ENST00000306024 SPATA1Q5VX52 437 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 NAA35Q5VZE5 725 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 NLRP14Q86W24 1093 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 CDK5RAP3Q96JB5 506 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 PSTPIP2Q9H939 334 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 FAM217BQ9NTX9 383 aaPredicted RBP11.96□□□□□ -0.49
LSM3-201ENST00000306024 TRIM10Q9UDY6 481 aa11.96□□□□□ -0.49
LSM3-201ENST00000306024 ADM5C9JUS6 153 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 TULP1O00294 542 aaPredicted RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 ZBED4O75132 1171 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 FSBPO95073 299 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 COL11A2P13942 1736 aaPredicted RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 LSP1P33241 339 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 NTRK3Q16288 839 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 CDC37Q16543 378 aaPredicted RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 CAPRIN2Q6IMN6 1127 aaKnown RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 METTL16Q86W50 562 aaKnown RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 ANKS4BQ8N8V4 417 aa11.96□□□□□ -0.5
LSM3-201ENST00000306024 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.96□□□□□ -0.5
LSM3-201ENST00000306024 CTNND1O60716 968 aaKnown RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 PRPF6O94906 941 aaKnown RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 BMP15O95972 392 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 NONOQ15233 471 aaKnown RBP eCLIP11.95□□□□□ -0.5
LSM3-201ENST00000306024 NBPF20Q3BBV1 942 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 TTC38Q5R3I4 469 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 ALS2CLQ60I27 953 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 CYB5D1Q6P9G0 228 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 ADGRF4Q8IZF3 695 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 CCT8L2Q96SF2 557 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 NUCKS1Q9H1E3 243 aaKnown RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 INTS13Q9NVM9 706 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 NDUFA10O95299 355 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 TRIM14Q14142 442 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 SHC4Q6S5L8 630 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 IFT20Q8IY31 132 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 OR8K1Q8NGG5 319 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 ARL8AQ96BM9 186 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 FOXP1Q9H334 677 aaPredicted RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 VCPKMTQ9H867 229 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 MAD2L2Q9UI95 211 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 MAPK8IP1Q9UQF2 711 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 ROBO3Q96MS0 1386 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 CNTNAP5Q8WYK1 1306 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 PNMA6FA0A0J9YX94 578 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 TARSL2A2RTX5 802 aaKnown RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 AKR1B10O60218 316 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 PPP1R37O75864 691 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 ALAS1P13196 640 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 CDC25AP30304 524 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 MTMR2Q13614 643 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 INF2Q27J81 1249 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 KRT25Q7Z3Z0 450 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 SMYD4Q8IYR2 804 aaPredicted RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 STAMQ92783 540 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 CCDC42Q96M95 316 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 SPZ1Q9BXG8 430 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 EPN3Q9H201 632 aa11.95□□□□□ -0.5
LSM3-201ENST00000306024 A1CFQ9NQ94 594 aaKnown RBP11.95□□□□□ -0.5
LSM3-201ENST00000306024 FXR1P51114 621 aaKnown RBP eCLIP11.94□□□□□ -0.5
LSM3-201ENST00000306024 PAK2Q13177 524 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 TBX2Q13207 712 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 NSMFQ6X4W1 530 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms