RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NPM3O75607 178 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 NOL4O94818 638 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 GIT2Q14161 759 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 MOXD1Q6UVY6 613 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 CNKSR1Q969H4 720 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 REEP2Q9BRK0 252 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 UBXN6Q9BZV1 441 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 DNM3Q9UQ16 869 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 PDE2AO00408 941 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 USO1O60763 962 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 ENTPD3O75355 529 aa20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 POLR2FP61218 127 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 ENOX2Q16206 610 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 TDRD12Q587J7 1177 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 SFR1Q86XK3 245 aa20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 CAGE1Q8TC20 777 aa20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 HNRNPLLQ8WVV9 542 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 RGL1Q9NZL6 768 aa20.27■□□□□ 0.84
SHKBP1-201ENST00000291842 RSPH10B2B2RC85 870 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 CFBP00751 764 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 RSPH10BP0C881 870 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 RPA1P27694 616 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 UBXN2AP68543 259 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 ARID5AQ03989 594 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 ZYXQ15942 572 aaKnown RBP20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 CCDC174Q6PII3 467 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 ERMNQ8TAM6 284 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 CEP63Q96MT8 703 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 TSGA10Q9BZW7 698 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 SH2D4AQ9H788 454 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 ATRNL1Q5VV63 1379 aa20.27■□□□□ 0.83
SHKBP1-201ENST00000291842 ZNF646O15015 1829 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 EML1O00423 815 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 MAP2K7O14733 419 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 ERLIN1O75477 346 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 RAD17O75943 681 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 GYS2P54840 703 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 FAM83BQ5T0W9 1011 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 TRIM59Q8IWR1 403 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 PSMB7Q99436 277 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 HINFPQ9BQA5 517 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 BHMT2Q9H2M3 363 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 SALL4Q9UJQ4 1053 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 FRMD3A2A2Y4 597 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 H3BQF6 201 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 FOSP01100 380 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 TUBB4BP68371 445 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 RASSF7Q02833 373 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 HGSNATQ68CP4 663 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 L1RE1Q9UN81 338 aa20.26■□□□□ 0.83
SHKBP1-201ENST00000291842 SFI1A8K8P3 1242 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 TLR2O60603 784 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 ZMYND10O75800 440 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 PRPF6O94906 941 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 MYBP10242 640 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 NR2F2P24468 414 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 MAGEA1P43355 309 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 FOXR2Q6PJQ5 311 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 CDAN1Q8IWY9 1227 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 SYT2Q8N9I0 419 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 VAV3Q9UKW4 847 aa20.25■□□□□ 0.83
SHKBP1-201ENST00000291842 ERICH4A6NGS2 130 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 TBX3O15119 743 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 CHMP2AO43633 222 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 STAT2P52630 851 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 BTNL9Q6UXG8 535 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 RUSC1Q9BVN2 902 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 PDE11AQ9HCR9 933 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 ZBTB12Q9Y330 459 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 PITPNM2Q9BZ72 1349 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 MYH10P35580 1976 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 TACC1O75410 805 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 LCA5LO95447 670 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 HOXA7P31268 230 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 CXCR5P32302 372 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 HOXD13P35453 343 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 EPS15P42566 896 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 MMP14P50281 582 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 USP14P54578 494 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 CTTNQ14247 550 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 SFMBT2Q5VUG0 894 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 HDXQ7Z353 690 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 TRIM58Q8NG06 486 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 PIGOQ8TEQ8 1089 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 FAM20AQ96MK3 541 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 EIF2AK1Q9BQI3 630 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 CEP72Q9P209 647 aa20.24■□□□□ 0.83
SHKBP1-201ENST00000291842 ANO9A1A5B4 782 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 CETN3O15182 167 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 BUB1O43683 1085 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 C2orf54Q08AI8 447 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 KCNH2Q12809 1159 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 ASTE1Q2TB18 679 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 MIGA2Q7L4E1 593 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 COG1Q8WTW3 980 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 ZBTB39O15060 712 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 NCK2O43639 380 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 GNA14O95837 355 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 ACTN1P12814 892 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 KCNA1Q09470 495 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms