RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SUPT20HQ8NEM7 779 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 KRT12Q99456 494 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 CAPS2Q9BXY5 557 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 ACTN1P12814 892 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 SATB1Q01826 763 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 TMEM266Q2M3C6 531 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 FAM83BQ5T0W9 1011 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 HGSNATQ68CP4 663 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 TTLL6Q8N841 843 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 CCDC43Q96MW1 224 aaKnown RBP11.07□□□□□ -0.64
LIG3-201ENST00000262327 ZIM3Q96PE6 472 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 CENPHQ9H3R5 247 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 SUGT1Q9Y2Z0 365 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 KIAA1551Q9HCM1 1747 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 PDHBP11177 359 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 AKR1B1P15121 316 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 STAT3P40763 770 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 ADCY7P51828 1080 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 COASYQ13057 564 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 FIGNQ5HY92 759 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 KCTD1Q719H9 257 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 GUF1Q8N442 669 aaKnown RBP11.07□□□□□ -0.64
LIG3-201ENST00000262327 NEDD1Q8NHV4 660 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 NOX5Q96PH1 765 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 CXorf56Q9H5V9 222 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 BCAS3Q9H6U6 928 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 MAGEF1Q9HAY2 307 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 DONSONQ9NYP3 566 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 SNED1Q8TER0 1413 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 SLX4Q8IY92 1834 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 NOL4O94818 638 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 HEXIM1O94992 359 aaKnown RBP11.07□□□□□ -0.64
LIG3-201ENST00000262327 ZBTB7AO95365 584 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 LDHCP07864 332 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 TCP1P17987 556 aaKnown RBP11.07□□□□□ -0.64
LIG3-201ENST00000262327 CDK17Q00537 523 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 MFSD14BQ5SR56 506 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 C16orf86Q6ZW13 317 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 CCDC84Q86UT8 332 aaPredicted RBP11.07□□□□□ -0.64
LIG3-201ENST00000262327 MYOCDQ8IZQ8 938 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 PANK4Q9NVE7 773 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 KIAA1024Q9UPX6 916 aa11.07□□□□□ -0.64
LIG3-201ENST00000262327 A0A087X0T9 212 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L15C9J2P7 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L13C9JLJ4 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L11C9JVI0 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L18D6R9N7 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L22D6RA61 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L17D6RBQ6 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L19D6RCP7 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L20D6RJB6 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 PPP1R11O60927 126 aaPredicted RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 FAM228BP0C875 321 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 TAL1P17542 331 aaPredicted RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 HNRNPH3P31942 346 aaKnown RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 MAGEA9P43362 315 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 CORO7P57737 925 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L24Q0WX57 530 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 R3HDM1Q15032 1099 aaKnown RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 USP17L6PQ6QN14 398 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 HOMEZQ8IX15 550 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 TSG101Q99816 390 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 LZTS2Q9BRK4 669 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 POTEB3A0JP26 581 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 POTECB2RU33 542 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 HSF2BPO75031 334 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 KCNA3P22001 575 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 SNAP25P60880 206 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 KIAA0753Q2KHM9 967 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 ASTE1Q2TB18 679 aaPredicted RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 TTC31Q49AM3 519 aaPredicted RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 HERC4Q5GLZ8 1057 aaPredicted RBP11.06□□□□□ -0.64
LIG3-201ENST00000262327 FAM26FQ5R3K3 315 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 SFMBT2Q5VUG0 894 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 POTEBQ6S5H4 581 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 RTKN2Q8IZC4 609 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 MXD3Q9BW11 206 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 FAM107BQ9H098 131 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 COL4A3BPQ9Y5P4 624 aa11.06□□□□□ -0.64
LIG3-201ENST00000262327 MEIS1O00470 390 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 MPHOSPH10O00566 681 aaKnown RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 RIMBP2O15034 1052 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 DPEP1P16444 411 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 EPHB4P54760 987 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 SHROOM1Q2M3G4 852 aaPredicted RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 SLC9C1Q4G0N8 1177 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 PODNQ7Z5L7 613 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 SLF2Q8IX21 1173 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 HAS1Q92839 578 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 DDX25Q9UHL0 483 aaKnown RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 SUFUQ9UMX1 484 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 PVALEFA0A1B0GWK0 134 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 FAM196BA6NMK8 535 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 PPP4CP60510 307 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 GUCY1A3Q02108 690 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 FAM43BQ6ZT52 329 aaPredicted RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 DDX42Q86XP3 938 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIG3-201ENST00000262327 DNAJC19Q96DA6 116 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 FAM212AQ96EL1 285 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 VPS33BQ9H267 617 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms