RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 GINM1Q9NU53 330 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 PEX3P56589 373 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 OSTNP61366 133 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 SREBF2Q12772 1141 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 MAPK6Q16659 721 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 MAP7D3Q8IWC1 876 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 MB21D1Q8N884 522 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 FBXO41Q8TF61 875 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 TMEM106CQ9BVX2 250 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 DEFB129Q9H1M3 183 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 KCNK9Q9NPC2 374 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 THAP12O43422 761 aa11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 P4HBP07237 508 aaKnown RBP11.29□□□□□ -0.6
NIPAL3-201ENST00000003912 ARMCX2Q7L311 632 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 PSPC1Q8WXF1 523 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 A6NJR5 290 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CTNND1O60716 968 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CELF2O95319 508 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CCNE1P24864 410 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 ANXA13P27216 316 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 MXI1P50539 228 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 USP11P51784 963 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 LONRF2Q1L5Z9 754 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CFAP157Q5JU67 520 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 LGSNQ5TDP6 509 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CASC4Q6P4E1 433 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 DSTYKQ6XUX3 929 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CCT6BQ92526 530 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 C2orf40Q9H1Z8 148 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 PPANQ9NQ55 473 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 QARSP47897 775 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 CROCCP2Q86T23 111 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 MXD3Q9BW11 206 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 NKIRAS1Q9NYS0 192 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 NXF1Q9UBU9 619 aaKnown RBP11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 SLC12A6Q9UHW9 1150 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 DDIT3P35638 169 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 ARPP19P56211 112 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 ZBTB16Q05516 673 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 PPP2R5EQ16537 467 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 C9orf131Q5VYM1 1079 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 BANK1Q8NDB2 785 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 PPM1EQ8WY54 764 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 MTRQ99707 1265 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 KIAA1586Q9HCI6 787 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 RWDD2AQ9UIY3 292 aa11.28□□□□□ -0.6
NIPAL3-201ENST00000003912 DENND3A2RUS2 1198 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 CRCPO75575 148 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 EVCP57679 992 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 LRRC63Q05C16 580 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 PPP2R5DQ14738 602 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 PADI6Q6TGC4 694 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 GCNAQ96QF7 691 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 SPZ1Q9BXG8 430 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 TNS2Q63HR2 1409 aa11.27□□□□□ -0.6
NIPAL3-201ENST00000003912 MXRA7P84157 204 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 C16orf86Q6ZW13 317 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 SAMD7Q7Z3H4 446 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 KLHL7Q8IXQ5 586 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 MICAL1Q8TDZ2 1067 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 PIGOQ8TEQ8 1089 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 FAM149B1Q96BN6 582 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 PAGE5Q96GU1 130 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 EPSTI1Q96J88 318 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 PLCD4Q9BRC7 762 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 TRIM7Q9C029 511 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 V9GYY5 206 aaPredicted RBP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 IPO5O00410 1097 aaKnown RBP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 PSMC5P62195 406 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 CBX1P83916 185 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 BBS5Q8N3I7 341 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 GRK7Q8WTQ7 553 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 ZFP91Q96JP5 570 aaPredicted RBP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 VCPKMTQ9H867 229 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 LRRC4Q9HBW1 653 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 MAN1B1Q9UKM7 699 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 GPR75-ASB3A0A0A6YYF3 556 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 CCL15-CCL14A0A0B4J2E2 113 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 IKBKBO14920 756 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 SLC25A27O95847 323 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 CCL15Q16663 113 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 TWF2Q6IBS0 349 aaKnown RBP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 SWSAP1Q6NVH7 229 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 TRIM31Q9BZY9 425 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 ADARB2Q9NS39 739 aaKnown RBP11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 GABBR1Q9UBS5 961 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 NEURL4Q96JN8 1562 aa11.27□□□□□ -0.61
NIPAL3-201ENST00000003912 RGL2O15211 777 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 NDUFB10O96000 172 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 ZNF543Q08ER8 600 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 SRGAP1Q7Z6B7 1085 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 MRFAP1L1Q96HT8 127 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 RAB17Q9H0T7 212 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 GIPC1O14908 333 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 CLDN3O15551 220 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 RINT1Q6NUQ1 792 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 THAP9Q9H5L6 903 aa11.26□□□□□ -0.61
NIPAL3-201ENST00000003912 TMEM260Q9NX78 707 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms