RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC16A2P36021 539 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 IFNAR2P48551 515 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SF3B3Q15393 1217 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 CDC37Q16543 378 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 CD99L2Q8TCZ2 262 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 KIF2CQ99661 725 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 CENPHQ9H3R5 247 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 RWDD3Q9Y3V2 267 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SYNCRIPO60506 623 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 GOLGA8HP0CJ92 632 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 STARD3Q14849 445 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 NEK8Q86SG6 692 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 NSUN7Q8NE18 718 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 SELENOOQ9BVL4 669 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 CLSTN2Q9H4D0 955 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TACC3Q9Y6A5 838 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TULP4Q9NRJ4 1543 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 N4BP1O75113 896 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 CYP2C9P11712 490 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 DMWDQ09019 674 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 DNAJC21Q5F1R6 531 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 BRAPQ7Z569 592 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 C12orf50Q8NA57 414 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 CTAGE1Q96RT6 745 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TRIM35Q9UPQ4 493 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 CDC42BPAQ5VT25 1732 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ZMYM4Q5VZL5 1548 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 H7C4K7 107 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 C2CD2LO14523 706 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 PARNO95453 639 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 DLATP10515 647 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 RAPGEF1Q13905 1077 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 LRRC31Q6UY01 552 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 FIBCD1Q8N539 461 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 STMN4Q9H169 189 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 SLC38A7Q9NVC3 462 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 UTYO14607 1347 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 GADD45BO75293 160 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ITGA4P13612 1032 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 GTF2F1P35269 517 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 FBXO22Q8NEZ5 403 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 STAG1Q8WVM7 1258 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 HAUS1Q96CS2 278 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF512Q96ME7 567 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 GPR108Q9NPR9 543 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ERAP1Q9NZ08 941 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 FGBP02675 491 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TTC38Q5R3I4 469 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 FAM83AQ86UY5 434 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TSPYL6Q8N831 410 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 APPL2Q8NEU8 664 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 MRPS31Q92665 395 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 NDUFS2O75306 463 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 SFNP31947 248 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ITPK1Q13572 414 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 FBXW10Q5XX13 1052 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 RHPN2Q8IUC4 686 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ABHD16BQ9H3Z7 469 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 CREBZFQ9NS37 354 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ZMYND8Q9ULU4 1186 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 PIK3CAP42336 1068 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 DYNLL1P63167 89 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 RAD51AP2Q09MP3 1159 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 ARL13BQ3SXY8 428 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 PPP2R2DQ66LE6 453 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 OSBP2Q969R2 916 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 PAIP2Q9BPZ3 127 aaKnown RBP5.48□□□□□ -1.53
SCN1A-218ENST00000640036 PFDN4Q9NQP4 134 aa5.48□□□□□ -1.53
SCN1A-218ENST00000640036 TMEM110-MUSTN1A8MSY1 372 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 RNF8O76064 485 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 TNFAIP3P21580 790 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CA4P22748 312 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SLC12A2P55011 1212 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 KCNH2Q12809 1159 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZBTB17Q13105 803 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SNX17Q15036 470 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 VWA3BQ502W6 1294 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SLC45A4Q5BKX6 768 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 RAB42Q8N4Z0 105 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SH3RF3Q8TEJ3 882 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 FAM81BQ96LP2 452 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZSWIM4Q9H7M6 989 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 DIP2AQ14689 1571 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PNMA6FA0A0J9YX94 578 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 LDHAP00338 332 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PDE6CP51160 858 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 MAPK8IP2Q13387 824 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 KRT81Q14533 505 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SCYL2Q6P3W7 929 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SPATA2LQ8IUW3 424 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 NAP1L3Q99457 506 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 KANSL3Q9P2N6 904 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CDHR2Q9BYE9 1310 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZC3H13Q5T200 1668 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ALDH1A2O94788 518 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PDIA3P30101 505 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 DEKP35659 375 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 OSTNP61366 133 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PPIL2Q13356 520 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PRPSAP1Q14558 356 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms