RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SLF1Q9BQI6 1058 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SENP1Q9P0U3 644 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 POLKQ9UBT6 870 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ANKARQ7Z5J8 1434 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SYNMO15061 1565 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SNX2O60749 519 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 DNM1Q05193 864 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SYNE4Q8N205 404 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NAPGQ99747 312 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NDEL1Q9GZM8 345 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 MRPL47Q9HD33 250 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SERTAD1Q9UHV2 236 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 AATKQ6ZMQ8 1374 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 K7ERI5 159 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TADA2AO75478 443 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 HDXQ7Z353 690 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 C8orf58Q8NAV2 365 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC138Q96M89 665 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 GDAP1L1Q96MZ0 367 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 GCOM2Q9BZD3 368 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 SUFUQ9UMX1 484 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ERBB4Q15303 1308 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 E5RI56 91 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DNAJC6O75061 913 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 RASGRF1Q13972 1273 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 SNX17Q15036 470 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 FAM135BQ49AJ0 1406 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 MTERF2Q49AM1 385 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DCUN1D1Q96GG9 259 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 SCUBE2Q9NQ36 999 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ENTPD7Q9NQZ7 604 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TLK1Q9UKI8 766 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TMEM94Q12767 1356 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ZC3H4Q9UPT8 1303 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 CEP104O60308 925 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DNAJC8O75937 253 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 INHBAP08476 426 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 FBLN1P23142 703 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TTC19Q6DKK2 380 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 OOSP2Q86WS3 158 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF654Q8IZM8 581 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DDX27Q96GQ7 796 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 VPS54Q9P1Q0 977 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ARHGAP10A1A4S6 786 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PRPF4O43172 522 aaKnown RBP eCLIP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF189O75820 626 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 SEC24BO95487 1268 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PDE1BQ01064 536 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 KARSQ15046 597 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 MCUQ8NE86 351 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PHKBQ93100 1093 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 KDM4CQ9H3R0 1056 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 IFNKQ9P0W0 207 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TJP2Q9UDY2 1190 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 CARMIL3Q8ND23 1372 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PLEKHG2Q9H7P9 1386 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 FOXP4Q8IVH2 680 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 HS6ST3Q8IZP7 471 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 WDR48Q8TAF3 677 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 U2AF1L4Q8WU68 220 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 LCMT1Q9UIC8 334 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 MICAL3Q7RTP6 2002 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ESPNB1AK53 854 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 HPDP32754 393 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ZAP70P43403 619 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PAPOLAP51003 745 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TSNAXIP1Q2TAA8 658 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 OR6J1Q8NGC5 347 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 OTUD5Q96G74 571 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PPP1R13BQ96KQ4 1090 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PPP1R16BQ96T49 567 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ZBTB18Q99592 522 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DNAJC25Q9H1X3 360 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 FAM47E-STBD1D6RA91 191 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 ATF2P15336 505 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 PSMC2P35998 433 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 AK2P54819 239 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 FAM160A1Q05DH4 1040 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM48Q8IWZ4 208 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 DIS3L2Q8IYB7 885 aaKnown RBP6.62□□□□□ -1.35
SCN1A-217ENST00000637988 OR6B3Q8NGW1 331 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 C2orf40Q9H1Z8 148 aa6.62□□□□□ -1.35
SCN1A-217ENST00000637988 OVOS2A0A0G2JMS6 1433 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 OVOS2A0A0J9YW53 1432 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 OVOS2Q6IE36 1432 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 DCDC2CA8MYV0 355 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 GDF11O95390 407 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 HSPA6P17066 643 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 DCAF4L1Q3SXM0 396 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SPDL1Q96EA4 605 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RSRC1Q96IZ7 334 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ZFP91Q96JP5 570 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM31Q9BZY9 425 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 MYO1DO94832 1006 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 IMPG1Q17R60 797 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 IER5Q5VY09 327 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 FBXW10Q5XX13 1052 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 TTC39CQ8N584 583 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 OXCT2Q9BYC2 517 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 DNAJC5BQ9UF47 199 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms