RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 M0R2N6 131 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 MAFGO15525 162 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 CYP3A4P08684 503 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 ARP10275 920 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 KCNA2P16389 499 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 XBP1P17861 261 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 FOSBP53539 338 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 CEP55Q53EZ4 464 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 METTL7BQ6UX53 244 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 ANKRD33Q7Z3H0 272 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 SH3RF1Q7Z6J0 888 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 SLC43A3Q8NBI5 491 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 DAGLBQ8NCG7 672 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 PPP1R13LQ8WUF5 828 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 CRYGNQ8WXF5 182 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 CDHR1Q96JP9 859 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 SENP7Q9BQF6 1050 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 PRDM5Q9NQX1 630 aaPredicted RBP11.22□□□□□ -0.61
CLN3-261ENST00000637686 TELO2Q9Y4R8 837 aa11.22□□□□□ -0.61
CLN3-261ENST00000637686 DCDC2CA8MYV0 355 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 FAM86B1E9PN63 330 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 MEIS1O00470 390 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 STX6O43752 255 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 EDIL3O43854 480 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 PPFIA4O75335 1185 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 BRD1O95696 1058 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 CLTBP09497 229 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 FAM86B2P0C5J1 330 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 CHMP4BP1P59074 171 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 SP4Q02446 784 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 FAAP100Q0VG06 881 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 NBPF20Q3BBV1 942 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 LARP1BQ659C4 914 aaKnown RBP11.21□□□□□ -0.61
CLN3-261ENST00000637686 PLA2G4DQ86XP0 818 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 KAT2BQ92831 832 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 TOX2Q96NM4 488 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 KCNH7Q9NS40 1196 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 PRKAG2Q9UGJ0 569 aa11.21□□□□□ -0.61
CLN3-261ENST00000637686 DOCK5Q9H7D0 1870 aa11.21□□□□□ -0.62
CLN3-261ENST00000637686 MROH7Q68CQ1 1323 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 TRIM43BA6NCK2 446 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 NOP56O00567 594 aaKnown RBP11.2□□□□□ -0.62
CLN3-261ENST00000637686 ZNF286BP0CG31 522 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 HOXD8P13378 290 aaPredicted RBP11.2□□□□□ -0.62
CLN3-261ENST00000637686 SYT1P21579 422 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 CIITAP33076 1130 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 NIPA1Q7RTP0 329 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 FAM126BQ8IXS8 530 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 GIMAP8Q8ND71 665 aaPredicted RBP11.2□□□□□ -0.62
CLN3-261ENST00000637686 FBXO18Q8NFZ0 1043 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 OXER1Q8TDS5 423 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 TBCKQ8TEA7 893 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 TRIM43Q96BQ3 446 aaPredicted RBP11.2□□□□□ -0.62
CLN3-261ENST00000637686 UIMC1Q96RL1 719 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 GPR20Q99678 358 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 AGO4Q9HCK5 861 aaKnown RBP11.2□□□□□ -0.62
CLN3-261ENST00000637686 PDLIM7Q9NR12 457 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 TMEM39AQ9NV64 488 aa11.2□□□□□ -0.62
CLN3-261ENST00000637686 IGLV3-22A0A075B6J6 115 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 TLR3O15455 904 aaKnown RBP11.19□□□□□ -0.62
CLN3-261ENST00000637686 B4GALT4O60513 344 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 F2P00734 622 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 CD4P01730 458 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 KRT2P35908 639 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 PSEN2P49810 448 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 USP11P51784 963 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 MDM2Q00987 491 aaPredicted RBP11.19□□□□□ -0.62
CLN3-261ENST00000637686 ITGB3BPQ13352 177 aaPredicted RBP11.19□□□□□ -0.62
CLN3-261ENST00000637686 TRIM29Q14134 588 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 NONOQ15233 471 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLN3-261ENST00000637686 PRR16Q569H4 304 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 FAM47CQ5HY64 1035 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 KRT40Q6A162 431 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 NFRKBQ6P4R8 1299 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 CHRDL2Q6WN34 429 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 CLEC17AQ6ZS10 378 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 KRT25Q7Z3Z0 450 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 SDF4Q9BRK5 362 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 C16orf70Q9BSU1 422 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 KATNAL1Q9BW62 490 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 SEZ6LQ9BYH1 1024 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 TRPV6Q9H1D0 765 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 TRMT13Q9NUP7 481 aaKnown RBP11.19□□□□□ -0.62
CLN3-261ENST00000637686 MTMR6Q9Y217 621 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 ATP6V1DQ9Y5K8 247 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 SCN10AQ9Y5Y9 1956 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 MYH15Q9Y2K3 1946 aa11.19□□□□□ -0.62
CLN3-261ENST00000637686 NFASCO94856 1347 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 CCDC194A0A1B0GVG4 234 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 GSTTP1A0A1W2PQM5 241 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 DDX39AO00148 427 aaKnown RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 HAS3O00219 553 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 KIAA0355O15063 1070 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 MMP1P03956 469 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 LGALS2P05162 132 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 ITGB8P26012 769 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 MAGEA10P43363 369 aaPredicted RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 SETQ01105 290 aaPredicted RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 GUCY1B3Q02153 619 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 NR5A1Q13285 461 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms