RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 KRT18P05783 430 aaKnown RBP17.39■□□□□ 0.37
CLN3-251ENST00000636853 ERVK-24P63145 666 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 TBC1D8BQ0IIM8 1120 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 NAA30Q147X3 362 aaPredicted RBP17.39■□□□□ 0.37
CLN3-251ENST00000636853 NBPF12Q5TAG4 269 aaPredicted RBP17.39■□□□□ 0.37
CLN3-251ENST00000636853 CCDC65Q8IXS2 484 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 SGIP1Q9BQI5 828 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 DEFB129Q9H1M3 183 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 ZHX3Q9H4I2 956 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 CCPG1Q9ULG6 757 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 CD2APQ9Y5K6 639 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 ZNF536O15090 1300 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 ABCB11O95342 1321 aa17.39■□□□□ 0.37
CLN3-251ENST00000636853 A0A0U1RQJ8 604 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 FZD9O00144 591 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 CCDC175P0C221 793 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 FECHP22830 423 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 HERC4Q5GLZ8 1057 aaPredicted RBP17.38■□□□□ 0.37
CLN3-251ENST00000636853 ATRIPQ8WXE1 791 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 RGL1Q9NZL6 768 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 DNM3Q9UQ16 869 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 ADGRG1Q9Y653 693 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 KIF20AO95235 890 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 TUBB4AP04350 444 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 ERCC3P19447 782 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 LRRC63Q05C16 580 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 SYCP1Q15431 976 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 EIF2AK1Q9BQI3 630 aaKnown RBP17.38■□□□□ 0.37
CLN3-251ENST00000636853 PCDHA2Q9Y5H9 948 aa17.38■□□□□ 0.37
CLN3-251ENST00000636853 GOLGA6L9A6NEM1 432 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 CHMP2AO43633 222 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 KIF4BQ2VIQ3 1234 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 NELFCDQ8IXH7 590 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 CPXCR1Q8N123 301 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 HOOK2Q96ED9 719 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 SLF1Q9BQI6 1058 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 ZNF215Q9UL58 517 aaPredicted RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 PHLPP2Q6ZVD8 1323 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 ZNF541Q9H0D2 1346 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 RASSF10A6NK89 507 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 WDR46O15213 610 aaKnown RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 CTNND1O60716 968 aaKnown RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 ICAM1P05362 532 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 LRCH2Q5VUJ6 765 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 PRAMEF18Q5VWM3 479 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 LRRC55Q6ZSA7 311 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 OTOP1Q7RTM1 612 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 TMTC1Q8IUR5 882 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 SYT2Q8N9I0 419 aaPredicted RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 PRPF38AQ8NAV1 312 aaKnown RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 NLGN2Q8NFZ4 835 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 ANKRD7Q92527 254 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 CHP1Q99653 195 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 TSG101Q99816 390 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 TANGO6Q9C0B7 1094 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 KIAA1683Q9H0B3 1180 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 LUC7L2Q9Y383 392 aaKnown RBP17.37■□□□□ 0.37
CLN3-251ENST00000636853 LTBP3Q9NS15 1303 aa17.37■□□□□ 0.37
CLN3-251ENST00000636853 NFIBO00712 420 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 GNG11P61952 73 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 ACRBPQ8NEB7 543 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 LPAR1Q92633 364 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 PCMTD1Q96MG8 357 aaPredicted RBP17.36■□□□□ 0.37
CLN3-251ENST00000636853 EHMT1Q9H9B1 1298 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 LZTFL1Q9NQ48 299 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 CAPN11Q9UMQ6 739 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 FZD1Q9UP38 647 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 PSMD10O75832 226 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 FGFR1OPO95684 399 aaKnown RBP17.36■□□□□ 0.37
CLN3-251ENST00000636853 ARP10275 920 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 NCBP1Q09161 790 aaKnown RBP17.36■□□□□ 0.37
CLN3-251ENST00000636853 MTMR2Q13614 643 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 GIT2Q14161 759 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 CTTNQ14247 550 aaKnown RBP17.36■□□□□ 0.37
CLN3-251ENST00000636853 VWA3BQ502W6 1294 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 CEP55Q53EZ4 464 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 CYP26C1Q6V0L0 522 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 TEX2Q8IWB9 1127 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 OR8K1Q8NGG5 319 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 WDR24Q96S15 920 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 BHMT2Q9H2M3 363 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 RAVER2Q9HCJ3 691 aaKnown RBP17.36■□□□□ 0.37
CLN3-251ENST00000636853 POLD4Q9HCU8 107 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 AGPAT5Q9NUQ2 364 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 COL20A1Q9P218 1284 aa17.36■□□□□ 0.37
CLN3-251ENST00000636853 FRMD3A2A2Y4 597 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 TRIM21P19474 475 aaKnown RBP17.35■□□□□ 0.37
CLN3-251ENST00000636853 HOXA7P31268 230 aaPredicted RBP17.35■□□□□ 0.37
CLN3-251ENST00000636853 ZCWPW2Q504Y3 356 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 SCFD1Q8WVM8 642 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 CLEC4DQ8WXI8 215 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 SLC5A5Q92911 643 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 REEP2Q9BRK0 252 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 POLR3CQ9BUI4 534 aaPredicted RBP17.35■□□□□ 0.37
CLN3-251ENST00000636853 IRX2Q9BZI1 471 aaPredicted RBP17.35■□□□□ 0.37
CLN3-251ENST00000636853 L2HGDHQ9H9P8 463 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 HOMER2Q9NSB8 354 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLN3-251ENST00000636853 STK24Q9Y6E0 443 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 V9GYY5 206 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms