RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SPATA31C1P0DKV0 1188 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 EHHADHQ08426 723 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 CTTNQ14247 550 aaKnown RBP11.79□□□□□ -0.52
CUX1-221ENST00000622516 VWA3BQ502W6 1294 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 LRRC55Q6ZSA7 311 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 KRT26Q7Z3Y9 468 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 FAM114A1Q8IWE2 563 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 SMAP1Q8IYB5 467 aaPredicted RBP11.79□□□□□ -0.52
CUX1-221ENST00000622516 DNAJC7Q99615 494 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 TTYH3Q9C0H2 523 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 NT5C3AQ9H0P0 336 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 PKD2L1Q9P0L9 805 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 TMX2Q9Y320 296 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 CYP3A7-CYP3A51PA0A087WV96 503 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 WNT10BO00744 389 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 TADA3O75528 432 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 CYP3A7P24462 503 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 AP3B2Q13367 1082 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 SPDYE2Q495Y8 402 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 FKBP15Q5T1M5 1219 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 TRMT1LQ7Z2T5 733 aaKnown RBP11.79□□□□□ -0.52
CUX1-221ENST00000622516 NIM1KQ8IY84 436 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 ZNF397Q8NF99 534 aaPredicted RBP11.79□□□□□ -0.52
CUX1-221ENST00000622516 IKZF4Q9H2S9 585 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 ZNF446Q9NWS9 450 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 ASTN2O75129 1339 aaPredicted RBP11.79□□□□□ -0.52
CUX1-221ENST00000622516 RCCD1A6NED2 376 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 FECHP22830 423 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 POLD1P28340 1107 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 SREBF1P36956 1147 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 SLC12A3P55017 1021 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 SLFN12Q8IYM2 578 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 GLT8D2Q9H1C3 349 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 BHMT2Q9H2M3 363 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 ZNRF3Q9ULT6 936 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 CLCN6P51797 869 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 HERVK_113P62684 666 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 SCFD1Q8WVM8 642 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 WDR18Q9BV38 432 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 LACRTQ9GZZ8 138 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 NHEJ1Q9H9Q4 299 aaPredicted RBP11.78□□□□□ -0.52
CUX1-221ENST00000622516 HDAC6Q9UBN7 1215 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 FZD1Q9UP38 647 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 C10orf71Q711Q0 1435 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 KDM3AQ9Y4C1 1321 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 CCDC40Q4G0X9 1142 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 TPH2Q8IWU9 490 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 AGBL1Q96MI9 1066 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 PSMD1Q99460 953 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 GOPCQ9HD26 462 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 NLRC4Q9NPP4 1024 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 HOMER2Q9NSB8 354 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 EMILIN3Q9NT22 766 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 PCDHA2Q9Y5H9 948 aa11.78□□□□□ -0.52
CUX1-221ENST00000622516 DDX39AO00148 427 aaKnown RBP11.77□□□□□ -0.52
CUX1-221ENST00000622516 SEC31AO94979 1220 aaKnown RBP11.77□□□□□ -0.52
CUX1-221ENST00000622516 KCNA1Q09470 495 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 SF3B2Q13435 895 aaKnown RBP11.77□□□□□ -0.52
CUX1-221ENST00000622516 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.52
CUX1-221ENST00000622516 CCDC122Q5T0U0 273 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 RRAGAQ7L523 313 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 CCDC65Q8IXS2 484 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 MBOAT7Q96N66 472 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 FEZ1Q99689 392 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 REEP2Q9BRK0 252 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 ZNF341Q9BYN7 854 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 DNM3Q9UQ16 869 aa11.77□□□□□ -0.52
CUX1-221ENST00000622516 PRPF6O94906 941 aaKnown RBP11.77□□□□□ -0.53
CUX1-221ENST00000622516 INPP5BP32019 993 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 CAP2P40123 477 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 LRRC63Q05C16 580 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 Q4G0T1 1027 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 HYIQ5T013 277 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 PRAMEF18Q5VWM3 479 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 HAUS3Q68CZ6 603 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 TSG101Q99816 390 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 RUSC1Q9BVN2 902 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 LRRC27Q9C0I9 530 aa11.77□□□□□ -0.53
CUX1-221ENST00000622516 ZNHIT6Q9NWK9 470 aaKnown RBP11.77□□□□□ -0.53
CUX1-221ENST00000622516 MACROD2A1Z1Q3 448 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 CTAGE9A4FU28 777 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 SRGAP2O75044 1071 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ZBED6P86452 979 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 FKBP3Q00688 224 aaKnown RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 SEMA3FQ13275 785 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 GIT2Q14161 759 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 RASA3Q14644 834 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 MAN2A1Q16706 1144 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 SAMD7Q7Z3H4 446 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 KIAA1328Q86T90 577 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 SFR1Q86XK3 245 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ERGIC2Q96RQ1 377 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 EIF2AK1Q9BQI3 630 aaKnown RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 VAV3Q9UKW4 847 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 SIK3Q9Y2K2 1263 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 IGLV3-22A0A075B6J6 115 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 EFCAB8A8MWE9 144 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 GCOM1H8Y6P7 765 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms