RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PHLPP2Q6ZVD8 1323 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 RASSF10A6NK89 507 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 TUBB4AP04350 444 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 SLC12A3P55017 1021 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 CYP4A11Q02928 519 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 TBC1D8BQ0IIM8 1120 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 FAM26FQ5R3K3 315 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 HAUS3Q68CZ6 603 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 LDHDQ86WU2 507 aa23.66■■□□□ 1.38
LIME1-210ENST00000621325 IRX2Q9BZI1 471 aaPredicted RBP23.66■■□□□ 1.38
LIME1-210ENST00000621325 BMP2KQ9NSY1 1161 aaPredicted RBP23.66■■□□□ 1.38
LIME1-210ENST00000621325 EML1O00423 815 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 ERCC3P19447 782 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 GMPSP49915 693 aaPredicted RBP23.65■■□□□ 1.38
LIME1-210ENST00000621325 SYCP1Q15431 976 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 FAM160B2Q86V87 743 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 LRRN4CLQ8ND94 238 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 FEM1BQ9UK73 627 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 BRCA1P38398 1863 aaKnown RBP23.65■■□□□ 1.38
LIME1-210ENST00000621325 GNG11P61952 73 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 PABPC4Q13310 644 aaKnown RBP eCLIP23.65■■□□□ 1.38
LIME1-210ENST00000621325 TBC1D10BQ4KMP7 808 aaPredicted RBP23.65■■□□□ 1.38
LIME1-210ENST00000621325 MICALL2Q8IY33 904 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 MYOCDQ8IZQ8 938 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 ACRBPQ8NEB7 543 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 AGBL1Q96MI9 1066 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 CHP1Q99653 195 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 LZTFL1Q9NQ48 299 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 PCDHA2Q9Y5H9 948 aa23.65■■□□□ 1.38
LIME1-210ENST00000621325 PLA2G6O60733 806 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 RPA1P27694 616 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 LRRC55Q6ZSA7 311 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 TEX2Q8IWB9 1127 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 ANKRD7Q92527 254 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 GJA3Q9Y6H8 435 aa23.64■■□□□ 1.38
LIME1-210ENST00000621325 GOLGA6L9A6NEM1 432 aa23.64■■□□□ 1.37
LIME1-210ENST00000621325 TMTC1Q8IUR5 882 aa23.64■■□□□ 1.37
LIME1-210ENST00000621325 ERMNQ8TAM6 284 aa23.64■■□□□ 1.37
LIME1-210ENST00000621325 MRPL11Q9Y3B7 192 aaKnown RBP23.64■■□□□ 1.37
LIME1-210ENST00000621325 PTGER2P43116 358 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 TRAF1Q13077 416 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 HERC4Q5GLZ8 1057 aaPredicted RBP23.63■■□□□ 1.37
LIME1-210ENST00000621325 ZNF771Q7L3S4 317 aaPredicted RBP23.63■■□□□ 1.37
LIME1-210ENST00000621325 AGPAT5Q9NUQ2 364 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 RGL1Q9NZL6 768 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 LUC7L2Q9Y383 392 aaKnown RBP23.63■■□□□ 1.37
LIME1-210ENST00000621325 SLU7O95391 586 aaKnown RBP23.63■■□□□ 1.37
LIME1-210ENST00000621325 LRRC63Q05C16 580 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 CCDC65Q8IXS2 484 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 ZHX3Q9H4I2 956 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 CAPN11Q9UMQ6 739 aa23.63■■□□□ 1.37
LIME1-210ENST00000621325 SLC26A4O43511 780 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 KRT18P05783 430 aaKnown RBP23.62■■□□□ 1.37
LIME1-210ENST00000621325 R3HDM1Q15032 1099 aaKnown RBP23.62■■□□□ 1.37
LIME1-210ENST00000621325 KIF4BQ2VIQ3 1234 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 CYP26C1Q6V0L0 522 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 NELFCDQ8IXH7 590 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 TTYH3Q9C0H2 523 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 ZNF536O15090 1300 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 ZCWPW2Q504Y3 356 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 OR8K1Q8NGG5 319 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 DNAJC7Q99615 494 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 EIF2AK1Q9BQI3 630 aaKnown RBP23.62■■□□□ 1.37
LIME1-210ENST00000621325 DNM3Q9UQ16 869 aa23.62■■□□□ 1.37
LIME1-210ENST00000621325 ABL1P00519 1130 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 POLD4Q9HCU8 107 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 CNOT7Q9UIV1 285 aaKnown RBP23.61■■□□□ 1.37
LIME1-210ENST00000621325 HACL1Q9UJ83 578 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 CHMP2AO43633 222 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 URI1O94763 535 aaPredicted RBP23.61■■□□□ 1.37
LIME1-210ENST00000621325 TRIM21P19474 475 aaKnown RBP23.61■■□□□ 1.37
LIME1-210ENST00000621325 RPS12P25398 132 aaKnown RBP23.61■■□□□ 1.37
LIME1-210ENST00000621325 TNFAIP1Q13829 316 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 WDR59Q6PJI9 974 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 CCPG1Q9ULG6 757 aa23.61■■□□□ 1.37
LIME1-210ENST00000621325 GIT2Q14161 759 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 VWA3BQ502W6 1294 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 OTOP1Q7RTM1 612 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 SYT2Q8N9I0 419 aaPredicted RBP23.6■■□□□ 1.37
LIME1-210ENST00000621325 SCFD1Q8WVM8 642 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 PCMTD1Q96MG8 357 aaPredicted RBP23.6■■□□□ 1.37
LIME1-210ENST00000621325 SLF1Q9BQI6 1058 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 BCAS3Q9H6U6 928 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 ABCB11O95342 1321 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 ATAD5Q96QE3 1844 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 FRMD3A2A2Y4 597 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 NBPF12Q5TAG4 269 aaPredicted RBP23.6■■□□□ 1.37
LIME1-210ENST00000621325 ERO1AQ96HE7 468 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 ERGIC2Q96RQ1 377 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 TSG101Q99816 390 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 REEP2Q9BRK0 252 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 DEFB129Q9H1M3 183 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 NDST4Q9H3R1 872 aa23.6■■□□□ 1.37
LIME1-210ENST00000621325 PSMD10O75832 226 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 CHRM1P11229 460 aaPredicted RBP23.59■■□□□ 1.37
LIME1-210ENST00000621325 CASP5P51878 434 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 CTTNQ14247 550 aaKnown RBP23.59■■□□□ 1.37
LIME1-210ENST00000621325 LRCH2Q5VUJ6 765 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 FBXO41Q8TF61 875 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 BHMT2Q9H2M3 363 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms