RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 HSD17B3P37058 310 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 GCLCP48506 637 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 IKQ13123 557 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 SLC44A4Q53GD3 710 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 FAM47EQ6ZV65 393 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 LRRC34Q8IZ02 419 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG1-207ENST00000594759 ANKRD27Q96NW4 1050 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PITPNM3Q9BZ71 974 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PANK4Q9NVE7 773 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 LIMA1Q9UHB6 759 aaKnown RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 CHMP2BQ9UQN3 213 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 ARL2BPQ9Y2Y0 163 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 MROH1Q8NDA8 1641 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 FAM200BP0CF97 657 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PPP2R5EQ16537 467 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 CCDC105Q8IYK2 499 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PRCCQ92733 491 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 OSBPL7Q9BZF2 842 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 GDAQ9Y2T3 454 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 A0A0G2JLW4 131 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 TMEM110-MUSTN1A8MSY1 372 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 C6orf229H3BNL8 230 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 M0R2C6 588 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 MAPK13O15264 365 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 TPD52L2O43399 206 aaKnown RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 ORC4O43929 436 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 UPP2O95045 317 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 VWA3BQ502W6 1294 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 HAUS3Q68CZ6 603 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 USP49Q70CQ1 688 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 SYCE1Q8N0S2 351 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 OSBP2Q969R2 916 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 SETDB2Q96T68 719 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 LBHD1Q9BQE6 289 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 MMADHCQ9H3L0 296 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 AZI2Q9H6S1 392 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 CCDC87Q9NVE4 849 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PDE2AO00408 941 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 ZNF189O75820 626 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 ZFXP17010 805 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 RFC5P40937 340 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 ALDH5A1P51649 535 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 IL9RQ01113 521 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 OLFM3Q96PB7 478 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 PUS3Q9BZE2 481 aaKnown RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 DDX47Q9H0S4 455 aaKnown RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 FOXP1Q9H334 677 aaPredicted RBP13.37□□□□□ -0.27
LIG1-207ENST00000594759 AMFRQ9UKV5 643 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 DIP2BQ9P265 1576 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ZNF233A6NK53 670 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 TCP11X1B4DZS4 312 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 DAPK3O43293 454 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 TROVE2P10155 538 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIG1-207ENST00000594759 AMPD2Q01433 879 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 BLMHQ13867 455 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ITIH4Q14624 930 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 INF2Q27J81 1249 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 DRAXINQ8NBI3 349 aaPredicted RBP13.36□□□□□ -0.27
LIG1-207ENST00000594759 XAGE2Q96GT9 111 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 PBKQ96KB5 322 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 COPRSQ9NQ92 184 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 SH3TC1Q8TE82 1336 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 TRIM49BA6NDI0 452 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 TMCC1O94876 653 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 CTDSPL2Q05D32 466 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 CNNM4Q6P4Q7 775 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ARHGEF18Q6ZSZ5 1173 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 LCA5Q86VQ0 697 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ERICH1Q86X53 443 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 LRRC37BQ96QE4 947 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 PLVAPQ9BX97 442 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 AGPAT5Q9NUQ2 364 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ERVV-2B6SEH9 535 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 GLI1P08151 1106 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 FAM153BP0C7A2 387 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 CYP7A1P22680 504 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 ZAP70P43403 619 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 PTGDRQ13258 359 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 FAM153CQ494X1 144 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 GSDMBQ8TAX9 411 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 MORC4Q8TE76 937 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 DDX12PQ92771 950 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 RUNDC3BQ96NL0 473 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 FAM153AQ9UHL3 310 aa13.36□□□□□ -0.27
LIG1-207ENST00000594759 PACSIN2Q9UNF0 486 aaPredicted RBP13.36□□□□□ -0.27
LIG1-207ENST00000594759 FAM170AA1A519 330 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 MGRN1O60291 552 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 KRT15P19012 456 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 GRIN1Q05586 938 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 DDX42Q86XP3 938 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIG1-207ENST00000594759 MRRFQ96E11 262 aaKnown RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 HPSEQ9Y251 543 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 PREX1Q8TCU6 1659 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 SRRM3A6NNA2 597 aaPredicted RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 CCDC188H7C350 402 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 PRDM1O75626 825 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 SERPINB3P29508 390 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms