RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ZBED6P86452 979 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 LRRC63Q05C16 580 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 GABPAQ06546 454 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 SLC35G1Q2M3R5 365 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 FIGNQ5HY92 759 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 DPP8Q6V1X1 898 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 UNC13DQ70J99 1090 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 RSRC2Q7L4I2 434 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 KIAA1328Q86T90 577 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 IRF2BP1Q8IU81 584 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 ZNF507Q8TCN5 953 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 MTMR9Q96QG7 549 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 DHX36Q9H2U1 1008 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 PRDM10Q9NQV6 1147 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 FAM53CQ9NYF3 392 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 SNED1Q8TER0 1413 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 A0A1W2PQJ5 194 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CTAGE15A4D2H0 777 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 TRIM49BA6NDI0 452 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 POLRMTO00411 1230 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 MPHOSPH10O00566 681 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 DKK1O94907 266 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CTAGE8P0CG41 777 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 ZNF543Q08ER8 600 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 SPA17Q15506 151 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 FOXR2Q6PJQ5 311 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 ZNF662Q6ZS27 426 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CAPN12Q6ZSI9 719 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 ZNF771Q7L3S4 317 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CTAGE6Q86UF2 777 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CTAGE4Q8IX94 777 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 GUF1Q8N442 669 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 CNOT6LQ96LI5 555 aaKnown RBP8.23□□□□□ -1.09
ZNF540-206ENST00000589117 SLF1Q9BQI6 1058 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 TSGA10Q9BZW7 698 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 PSTPIP2Q9H939 334 aa8.23□□□□□ -1.09
ZNF540-206ENST00000589117 AFF2P51816 1311 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 FRMPD2Q68DX3 1309 aaPredicted RBP8.22□□□□□ -1.09
ZNF540-206ENST00000589117 KDM3AQ9Y4C1 1321 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 B4DLN1 442 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 ZBTB5O15062 677 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 USO1O60763 962 aaKnown RBP8.22□□□□□ -1.09
ZNF540-206ENST00000589117 PNMA6AP0CW24 399 aaPredicted RBP8.22□□□□□ -1.09
ZNF540-206ENST00000589117 TNNI2P48788 182 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 ERVK-24P63145 666 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 CDK17Q00537 523 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 MTMR3Q13615 1198 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 CCDC96Q2M329 555 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 ANKRD40Q6AI12 368 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 CENPPQ6IPU0 288 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 PODNQ7Z5L7 613 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 RNF135Q8IUD6 432 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 ADGRF4Q8IZF3 695 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 LRRC47Q8N1G4 583 aaKnown RBP8.22□□□□□ -1.09
ZNF540-206ENST00000589117 FLAD1Q8NFF5 587 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 SNX29Q8TEQ0 813 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 RPGRIP1Q96KN7 1286 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 ERGIC2Q96RQ1 377 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 MRIQ9BWK5 157 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 PARD6BQ9BYG5 372 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 EHD4Q9H223 541 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 CPVLQ9H3G5 476 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 DDX25Q9UHL0 483 aaKnown RBP8.22□□□□□ -1.09
ZNF540-206ENST00000589117 PCDHA12Q9UN75 941 aa8.22□□□□□ -1.09
ZNF540-206ENST00000589117 IGKV6D-41A0A0C4DH26 115 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 F8W031 263 aaPredicted RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ZRANB2O95218 330 aaKnown RBP eCLIP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ABL1P00519 1130 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 HOXB1P14653 301 aaPredicted RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ATP2B2Q01814 1243 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 STK4Q13043 487 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 CCDC122Q5T0U0 273 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 IQCEQ6IPM2 695 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ARHGAP27Q6ZUM4 889 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ZSCAN29Q8IWY8 852 aaPredicted RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 SLC35F6Q8N357 371 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 LRRN4CLQ8ND94 238 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ACRBPQ8NEB7 543 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 HNRNPLLQ8WVV9 542 aaKnown RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 COA7Q96BR5 231 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 CCDC42Q96M95 316 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 DUSP9Q99956 384 aaKnown RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 IRX2Q9BZI1 471 aaPredicted RBP8.21□□□□□ -1.09
ZNF540-206ENST00000589117 JMJD4Q9H9V9 463 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 ZNF446Q9NWS9 450 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 MYO6Q9UM54 1294 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 GUCA1BQ9UMX6 200 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 FHOD1Q9Y613 1164 aa8.21□□□□□ -1.09
ZNF540-206ENST00000589117 FANCGO15287 622 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 EIF3JO75822 258 aaKnown RBP8.21□□□□□ -1.1
ZNF540-206ENST00000589117 IDEP14735 1019 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 AKR1B1P15121 316 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 USP11P51784 963 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 PMS1P54277 932 aaKnown RBP8.21□□□□□ -1.1
ZNF540-206ENST00000589117 KIF5AQ12840 1032 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 TRAF1Q13077 416 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 MEA1Q16626 185 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 CCDC70Q6NSX1 233 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 CC2D1AQ6P1N0 951 aaPredicted RBP8.21□□□□□ -1.1
ZNF540-206ENST00000589117 TRAF7Q6Q0C0 670 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms