RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 SH3PXD2AQ5TCZ1 1133 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 SYDE2Q5VT97 1194 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 TTBK2Q6IQ55 1244 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 LRRC69Q6ZNQ3 347 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 FASTKD5Q7L8L6 764 aaKnown RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 FAM160B2Q86V87 743 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 SRBD1Q8N5C6 995 aaKnown RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 SMARCC2Q8TAQ2 1214 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 CHURC1Q8WUH1 139 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 WASF1Q92558 559 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 RRP36Q96EU6 259 aaKnown RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 WNK4Q96J92 1243 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 RNF26Q9BY78 433 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 CPVLQ9H3G5 476 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 RPAP3Q9H6T3 665 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 CWC22Q9HCG8 908 aaKnown RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 STK36Q9NRP7 1315 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 ORC3Q9UBD5 711 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 FEM1BQ9UK73 627 aa6.12□□□□□ -1.43
LIG3-210ENST00000588109 ATXN7L1Q9ULK2 861 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 CTDP1Q9Y5B0 961 aaPredicted RBP6.12□□□□□ -1.43
LIG3-210ENST00000588109 PHIPQ8WWQ0 1821 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 CNTNAP5Q8WYK1 1306 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 CCL15-CCL14A0A0B4J2E2 113 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 A0A0G2JLL6 359 aaPredicted RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 FAM181BA6NEQ2 426 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PRPF3O43395 683 aaKnown RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 ZBTB48P10074 688 aaPredicted RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 CETPP11597 493 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PDIA4P13667 645 aaKnown RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 XBP1P17861 261 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 SMARCA1P28370 1054 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 GTF2A2P52657 109 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 GRM1Q13255 1194 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PABPC4Q13310 644 aaKnown RBP eCLIP6.11□□□□□ -1.43
LIG3-210ENST00000588109 NTRK3Q16288 839 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 CCL15Q16663 113 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 LARP1BQ659C4 914 aaKnown RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 RGMBQ6NW40 437 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 HEATR3Q7Z4Q2 680 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PRRT2Q7Z6L0 340 aaPredicted RBP6.11□□□□□ -1.43
LIG3-210ENST00000588109 NBPF11Q86T75 865 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 SAPCD2Q86UD0 394 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 ADGRF4Q8IZF3 695 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 ABHD17AQ96GS6 310 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 C8orf76Q96K31 380 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 C12orf42Q96LP6 360 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PIGSQ96S52 555 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 SLF1Q9BQI6 1058 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 ALG1Q9BT22 464 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 SPZ1Q9BXG8 430 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PRR12Q9ULL5 1215 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 KCNH4Q9UQ05 1017 aa6.11□□□□□ -1.43
LIG3-210ENST00000588109 PNMA6FA0A0J9YX94 578 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 VPS37CA5D8V6 355 aaPredicted RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 ZBTB5O15062 677 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 CYTH3O43739 400 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 BNIP3LO60238 219 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 ZBED4O75132 1171 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 SCG2P13521 617 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 SNAP25P60880 206 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 IRX3P78415 501 aaPredicted RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 GUCY1B3Q02153 619 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 SRSF11Q05519 484 aaKnown RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 PDE4CQ08493 712 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 TRAF1Q13077 416 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 GNL2Q13823 731 aaKnown RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 COG2Q14746 738 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 CDC37Q16543 378 aaPredicted RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 PFKFB3Q16875 520 aaPredicted RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 RNFT1Q5M7Z0 435 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 TREML2Q5T2D2 321 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 LCE2CQ5TA81 110 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 CCDC174Q6PII3 467 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 BTNL9Q6UXG8 535 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 RASAL3Q86YV0 1011 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 PRPF38AQ8NAV1 312 aaKnown RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 ZSCAN1Q8NBB4 408 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 CCDC12Q8WUD4 166 aaPredicted RBP6.1□□□□□ -1.43
LIG3-210ENST00000588109 CEP63Q96MT8 703 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 RIOX1Q9H6W3 641 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 JMJD4Q9H9V9 463 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 FBXO28Q9NVF7 368 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 AGTPBP1Q9UPW5 1226 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 LOC285556D6RIA3 1793 aa6.1□□□□□ -1.43
LIG3-210ENST00000588109 PTPRFP10586 1907 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 MYH6P13533 1939 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 WDR33Q9C0J8 1336 aaKnown RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 DCDC2BA2VCK2 349 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 MANSC4A6NHS7 340 aaPredicted RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 hCG_1984214I3L0E3 225 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 STX6O43752 255 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 PLA2G6O60733 806 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 BMP4P12644 408 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 FDPSP14324 419 aaKnown RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 SYT1P21579 422 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 FGFR3P22607 806 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 MAP2K3P46734 347 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 NAPAP54920 295 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 NLRP5P59047 1200 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms