RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	ASTE1	Q2TB18	679 aa	Predicted RBP	18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	RIC8A	Q9NPQ8	531 aa		18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	LEMD3	Q9Y2U8	911 aa		18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	FAM169A	Q9Y6X4	670 aa		18.83	■□□□□ 0.6
VPS53-215	ENST00000573028	NDUFAB1	O14561	156 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	NOL4	O94818	638 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	AKR1B1	P15121	316 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	FAM107B	Q9H098	131 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	CEP72	Q9P209	647 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	COL22A1	Q8NFW1	1626 aa	Predicted RBP	18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	MYH1	P12882	1939 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	POTEB3	A0JP26	581 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	POTEC	B2RU33	542 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	EIF3H	O15372	352 aa	Known RBP eCLIP	18.82	■□□□□ 0.6	7e-7	■□□□□ 9.9
VPS53-215	ENST00000573028	RPS6KA4	O75676	772 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	SERPING1	P05155	500 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	ACTN1	P12814	892 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	GPSM2	P81274	684 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	GRAP	Q13588	217 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	CCDC88A	Q3V6T2	1871 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	POTEB	Q6S5H4	581 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	KCTD1	Q719H9	257 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	MAATS1	Q7Z4T9	603 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	GPBP1	Q86WP2	473 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	GRAPL	Q8TC17	118 aa	Predicted RBP	18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	LUC7L	Q9NQ29	371 aa	Known RBP	18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	LAMB2	P55268	1798 aa		18.82	■□□□□ 0.6
VPS53-215	ENST00000573028	PJA2	O43164	708 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	SHOX2	O60902	331 aa	Predicted RBP	18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	DNAJC19	Q96DA6	116 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	RIOX1	Q9H6W3	641 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	SSU72P8	A0A1W2PR75	194 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	ITIH3	Q06033	890 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	COBLL1	Q53SF7	1204 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	ATP6V0A2	Q9Y487	856 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	IRS2	Q9Y4H2	1338 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	KCNK3	O14649	394 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	RFC4	P35249	363 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	STAT3	P40763	770 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	ADAM9	Q13443	819 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	TADA2B	Q86TJ2	420 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	CERS3	Q8IU89	383 aa		18.81	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L15	C9J2P7	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L13	C9JLJ4	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L11	C9JVI0	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L18	D6R9N7	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L22	D6RA61	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L17	D6RBQ6	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L19	D6RCP7	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L20	D6RJB6	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	GUCY1A3	Q02108	690 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L24	Q0WX57	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	ALS2CL	Q60I27	953 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L6P	Q6QN14	398 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	EFCAB13	Q8IY85	973 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	ADGRF4	Q8IZF3	695 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	RNF10	Q8N5U6	811 aa	Known RBP	18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	TAF4B	Q92750	862 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	RPGR	Q92834	1020 aa	Known RBP	18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	HAS1	Q92839	578 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	MTMR4	Q9NYA4	1195 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	CCNL1	Q9UK58	526 aa	Predicted RBP	18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	C6orf229	H3BNL8	230 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	PAK2	Q13177	524 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	PDIA5	Q14554	519 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	ASIC2	Q16515	512 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	TCERG1L	Q5VWI1	586 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	CNBD1	Q8NA66	436 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	SPAG5	Q96R06	1193 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	LRRC27	Q9C0I9	530 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	GRIN2D	O15399	1336 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	SPATA31A5	Q5VU36	1347 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	SPATA31A7	Q8IWB4	1347 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	ROBO1	Q9Y6N7	1651 aa		18.8	■□□□□ 0.6
VPS53-215	ENST00000573028	GPR75-ASB3	A0A0A6YYF3	556 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	HPD	P32754	393 aa	Predicted RBP	18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	ZNF572	Q7Z3I7	529 aa	Predicted RBP	18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	CASKIN2	Q8WXE0	1202 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	SH3GL2	Q99962	352 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	JMJD4	Q9H9V9	463 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	ESYT2	A0FGR8	921 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	USP17L10	C9JJH3	530 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	RHBDL3	P58872	404 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	PSMD2	Q13200	908 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	CCDC65	Q8IXS2	484 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	TMCO5B	A8MYB1	307 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	MEIS1	O00470	390 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	PPP1R11	O60927	126 aa	Predicted RBP	18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	PLA2G4B	P0C869	781 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	NAB2	Q15742	525 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	SLC18A3	Q16572	532 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	TMEM119	Q4V9L6	283 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	EMILIN3	Q9NT22	766 aa		18.79	■□□□□ 0.6
VPS53-215	ENST00000573028	RIMBP2	O15034	1052 aa		18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	CEP104	O60308	925 aa		18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	ERLIN2	O94905	339 aa		18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	DCAF17	Q5H9S7	520 aa	Predicted RBP	18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	GBP6	Q6ZN66	633 aa		18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	PROM2	Q8N271	834 aa		18.78	■□□□□ 0.6
VPS53-215	ENST00000573028	AP1M1	Q9BXS5	423 aa		18.78	■□□□□ 0.6

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