RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	MED15	Q96RN5	788 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM153A	Q9UHL3	310 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	MEGF6	O75095	1541 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	SART1	O43290	800 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	SMIM5	Q71RC9	77 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	SLC44A5	Q8NCS7	719 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	MDM1	Q8TC05	714 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	PIGS	Q96S52	555 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	KDM6A	O15550	1401 aa	Predicted RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	PDS5A	Q29RF7	1337 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	ARHGAP23	Q9P227	1491 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM237A	A0A1B0GTK4	181 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	CLIC2	O15247	247 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	KLRC1	P26715	233 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	GSTO1	P78417	241 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	ZNF211	Q13398	564 aa	Predicted RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	CAPN12	Q6ZSI9	719 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	RPGR	Q92834	1020 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM167B	Q9BTA0	163 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FMN2	Q9NZ56	1722 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	CTNNA2	P26232	953 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	CYP2J2	P51589	502 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	KCNQ4	P56696	695 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.44	□□□□□ -0.42	3e-6	■■■■□ 26.6
CLN3-238	ENST00000569430	CCDC38	Q502W7	563 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	SUSD4	Q5VX71	490 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	HAUS3	Q68CZ6	603 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	RNF10	Q8N5U6	811 aa	Known RBP	12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	UBL4B	Q8N7F7	174 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	GIMAP8	Q8ND71	665 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	PIGB	Q92521	554 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	ARHGEF2	Q92974	986 aa	Known RBP	12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	SETDB2	Q96T68	719 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	TBK1	Q9UHD2	729 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	REXO2	Q9Y3B8	237 aa	Known RBP	12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM107A	O95990	144 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	ZNF131	P52739	623 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	AMPD2	Q01433	879 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	CUL1	Q13616	776 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	LRRC14	Q15048	493 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	DNAAF5	Q86Y56	855 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	GDAP1	Q8TB36	358 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	PSMD1	Q99460	953 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	MAGEF1	Q9HAY2	307 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM114A2	Q9NRY5	505 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	BTG4	Q9NY30	223 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	ARHGAP20	Q9P2F6	1191 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	KLHL14	Q9P2G3	628 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	CPSF2	Q9P2I0	782 aa	Known RBP	12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	SERPINA10	Q9UK55	444 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	RPS6KA5	O75582	802 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	RHOBTB3	O94955	611 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	GNA14	O95837	355 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	KCNB1	Q14721	858 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	PARP10	Q53GL7	1025 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	NUGGC	Q68CJ6	796 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	KCNV2	Q8TDN2	545 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	CUL5	Q93034	780 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	PLAGL2	Q9UPG8	496 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	DNM3	Q9UQ16	869 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	TOPAZ1	Q8N9V7	1692 aa		12.44	□□□□□ -0.42
CLN3-238	ENST00000569430	MEIS1	O00470	390 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	LAD1	O00515	517 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	WNT7A	O00755	349 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	LRRN2	O75325	713 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PRDX5	P30044	214 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	ALDH3A1	P30838	453 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	MESD	Q14696	234 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	LMNTD2	Q8IXW0	634 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	NEK9	Q8TD19	979 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	SEC16B	Q96JE7	1060 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PBK	Q96KB5	322 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	RIC8A	Q9NPQ8	531 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	SUN1	O94901	812 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PDXDC2P	Q6P474	469 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PDXDC1	Q6P996	788 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	STXBP4	Q6ZWJ1	553 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	CREG2	Q8IUH2	290 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	MYCT1	Q8N699	235 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	NKX2-3	Q8TAU0	364 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	CASKIN2	Q8WXE0	1202 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	ZMYND12	Q9H0C1	365 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	ATP8A2	Q9NTI2	1148 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	FRMD4B	Q9Y2L6	1034 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	CALU	O43852	315 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PDHB	P11177	359 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	SCP2	P22307	547 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	MECOM	Q03112	1051 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	LRRC63	Q05C16	580 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	TROAP	Q12815	778 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	MKRN4P	Q13434	485 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	BIRC3	Q13489	604 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	DIXDC1	Q155Q3	683 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	WDR59	Q6PJI9	974 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	EP400NL	Q6ZTU2	488 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	SPDL1	Q96EA4	605 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	EMILIN3	Q9NT22	766 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	TMEM260	Q9NX78	707 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	PKD2L1	Q9P0L9	805 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	DDX25	Q9UHL0	483 aa	Known RBP	12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms