RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C16orf59Q7L2K0 433 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 NLRX1Q86UT6 975 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 CYP2W1Q8TAV3 490 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 SENP7Q9BQF6 1050 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 NOC4LQ9BVI4 516 aaKnown RBP17.21■□□□□ 0.35
VPS39-210ENST00000568357 ZMYND12Q9H0C1 365 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 GLT8D2Q9H1C3 349 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 KIAA1217Q5T5P2 1943 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 ESYT2A0FGR8 921 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 EIF5BO60841 1220 aaKnown RBP17.2■□□□□ 0.34
VPS39-210ENST00000568357 PTPN11Q06124 597 aaPredicted RBP17.2■□□□□ 0.34
VPS39-210ENST00000568357 C8orf34Q49A92 452 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 JAKMIP3Q5VZ66 844 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 METTL7BQ6UX53 244 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 GPRASP2Q96D09 838 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 C16orf70Q9BSU1 422 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 ANO3Q9BYT9 981 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 HIPK3Q9H422 1215 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 JADE2Q9NQC1 790 aa17.2■□□□□ 0.34
VPS39-210ENST00000568357 TMEM265A0A087WTH1 108 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 HAS3O00219 553 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 F2P00734 622 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 SUPT20HL2P0C7V6 817 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 CSF2RAP15509 400 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 KCNA2P16389 499 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 PSEN2P49810 448 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 AK2P54819 239 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 SMAD3P84022 425 aaKnown RBP17.19■□□□□ 0.34
VPS39-210ENST00000568357 SSRP1Q08945 709 aaKnown RBP17.19■□□□□ 0.34
VPS39-210ENST00000568357 SCRN1Q12765 414 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 MFSD10Q14728 455 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 KIAA0753Q2KHM9 967 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 CTAGE1Q96RT6 745 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 GPR20Q99678 358 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 MXRA8Q9BRK3 442 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 ALG1Q9BT22 464 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 EHMT1Q9H9B1 1298 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 C6orf50Q9HD87 102 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 VPS54Q9P1Q0 977 aa17.19■□□□□ 0.34
VPS39-210ENST00000568357 CPLX1O14810 134 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 DTNBO60941 627 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 SREBF1P36956 1147 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 CCL23P55773 120 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 AP3B2Q13367 1082 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 MTMR1Q13613 665 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 GDF6Q6KF10 455 aaPredicted RBP17.18■□□□□ 0.34
VPS39-210ENST00000568357 SESTD1Q86VW0 696 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 TMEM199Q8N511 208 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 CCDC12Q8WUD4 166 aaPredicted RBP17.18■□□□□ 0.34
VPS39-210ENST00000568357 CDHR1Q96JP9 859 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 WNT8AQ9H1J5 351 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 SLKQ9H2G2 1235 aaPredicted RBP17.18■□□□□ 0.34
VPS39-210ENST00000568357 KCNH7Q9NS40 1196 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 PKD2L1Q9P0L9 805 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 HDAC6Q9UBN7 1215 aa17.18■□□□□ 0.34
VPS39-210ENST00000568357 NOP56O00567 594 aaKnown RBP17.17■□□□□ 0.34
VPS39-210ENST00000568357 MAFGO15525 162 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 PFKFB2O60825 505 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 LGALS2P05162 132 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 ARP10275 920 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 ACRP10323 421 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 GNA11P29992 359 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 NEK4P51957 841 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 SP4Q02446 784 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 HIC1Q14526 733 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 PTGISQ16647 500 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 CEP55Q53EZ4 464 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 TRIM22Q8IYM9 498 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 C7orf31Q8N865 590 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 GIMAP8Q8ND71 665 aaPredicted RBP17.17■□□□□ 0.34
VPS39-210ENST00000568357 RASGRP4Q8TDF6 673 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 CRYGNQ8WXF5 182 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 FAM122AQ96E09 287 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 AIFM3Q96NN9 605 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 KATNAL1Q9BW62 490 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 GTF2IRD1Q9UHL9 959 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 SCN10AQ9Y5Y9 1956 aa17.17■□□□□ 0.34
VPS39-210ENST00000568357 H3BRB1 525 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 MEIS1O00470 390 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 ARHGAP4P98171 946 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 PPIGQ13427 754 aaKnown RBP eCLIP17.16■□□□□ 0.341e-9■■■■□ 20.6
VPS39-210ENST00000568357 ANKRD1Q15327 319 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 REXO1Q8N1G1 1221 aaKnown RBP17.16■□□□□ 0.34
VPS39-210ENST00000568357 VWCEQ96DN2 955 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.16■□□□□ 0.34
VPS39-210ENST00000568357 TUT1Q9H6E5 874 aaKnown RBP17.16■□□□□ 0.34
VPS39-210ENST00000568357 SH3GLB2Q9NR46 395 aa17.16■□□□□ 0.34
VPS39-210ENST00000568357 GSTTP1A0A1W2PQM5 241 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 FAM86B1E9PN63 330 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 DEXIO95424 95 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 CTDNEP1O95476 244 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 CYP3A4P08684 503 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 FAM86B2P0C5J1 330 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 ZNF200P98182 395 aaPredicted RBP17.15■□□□□ 0.34
VPS39-210ENST00000568357 GRIN2CQ14957 1233 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 ME3Q16798 604 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 TMEM240Q5SV17 173 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 UTP14CQ5TAP6 766 aaKnown RBP17.15■□□□□ 0.34
VPS39-210ENST00000568357 CPLX2Q6PUV4 134 aaKnown RBP17.15■□□□□ 0.34
VPS39-210ENST00000568357 ZNF365Q70YC5 407 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms