RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ARHGAP29Q52LW3 1261 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 MNS1Q8NEH6 495 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 SCAF8Q9UPN6 1271 aaKnown RBP22.52■■□□□ 1.2
CLN3-230ENST00000568076 SIK3Q9Y2K2 1263 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 ZBED6P86452 979 aa22.51■■□□□ 1.19
CLN3-230ENST00000568076 HERC4Q5GLZ8 1057 aaPredicted RBP22.51■■□□□ 1.19
CLN3-230ENST00000568076 ZNF569Q5MCW4 686 aa22.51■■□□□ 1.19
CLN3-230ENST00000568076 ERMNQ8TAM6 284 aa22.51■■□□□ 1.19
CLN3-230ENST00000568076 CHURC1Q8WUH1 139 aa22.51■■□□□ 1.19
CLN3-230ENST00000568076 PCMTD1Q96MG8 357 aaPredicted RBP22.51■■□□□ 1.19
CLN3-230ENST00000568076 TSG101Q99816 390 aa22.51■■□□□ 1.19
CLN3-230ENST00000568076 A0A1W2PQJ5 194 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 MAP3K10Q02779 954 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 SF3B2Q13435 895 aaKnown RBP22.5■■□□□ 1.19
CLN3-230ENST00000568076 WDR18Q9BV38 432 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 FBXO28Q9NVF7 368 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 PITPNM2Q9BZ72 1349 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 EML1O00423 815 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 EPHB6O15197 1021 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 ERCC3P19447 782 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 ZNF76P36508 570 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 PABPC4Q13310 644 aaKnown RBP eCLIP22.5■■□□□ 1.193e-6■■■■□ 26.6
CLN3-230ENST00000568076 TSR1Q2NL82 804 aaKnown RBP22.5■■□□□ 1.19
CLN3-230ENST00000568076 NELFCDQ8IXH7 590 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 SCFD1Q8WVM8 642 aa22.5■■□□□ 1.19
CLN3-230ENST00000568076 EFCAB8A8MWE9 144 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 PLA2G6O60733 806 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 HERVK_113P62684 666 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 GIT2Q14161 759 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 SLC30A10Q6XR72 485 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 SLC35F6Q8N357 371 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 SYT2Q8N9I0 419 aaPredicted RBP22.49■■□□□ 1.19
CLN3-230ENST00000568076 GCOM1H8Y6P7 765 aaPredicted RBP22.49■■□□□ 1.19
CLN3-230ENST00000568076 POLR2MP0CAP2 368 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 FKBP3Q00688 224 aaKnown RBP22.49■■□□□ 1.19
CLN3-230ENST00000568076 CYP4A11Q02928 519 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 PPP2R3AQ06190 1150 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 TRAF1Q13077 416 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 KCTD10Q9H3F6 313 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 MYOZ2Q9NPC6 264 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 PIM2Q9P1W9 311 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 TRIM10Q9UDY6 481 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 DNM3Q9UQ16 869 aa22.49■■□□□ 1.19
CLN3-230ENST00000568076 TRAF5O00463 557 aa22.48■■□□□ 1.19
CLN3-230ENST00000568076 H2AFXP16104 143 aaPredicted RBP22.48■■□□□ 1.19
CLN3-230ENST00000568076 CIAPIN1Q6FI81 312 aa22.48■■□□□ 1.19
CLN3-230ENST00000568076 TEX2Q8IWB9 1127 aa22.48■■□□□ 1.19
CLN3-230ENST00000568076 UBXN4Q92575 508 aa22.48■■□□□ 1.19
CLN3-230ENST00000568076 COL4A3BPQ9Y5P4 624 aa22.48■■□□□ 1.19
CLN3-230ENST00000568076 KRT18P05783 430 aaKnown RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 UBXN2AP68543 259 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 SAMD1Q6SPF0 538 aaPredicted RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 FAM160B2Q86V87 743 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 EIF2AK1Q9BQI3 630 aaKnown RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 SH2D4AQ9H788 454 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 EMILIN3Q9NT22 766 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 PHF20L1A8MW92 1017 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 EGFRP00533 1210 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 CASP5P51878 434 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 CCDC155Q8N6L0 562 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 REEP2Q9BRK0 252 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 POLR3CQ9BUI4 534 aaPredicted RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 ZHX3Q9H4I2 956 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 NHEJ1Q9H9Q4 299 aaPredicted RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 FAM207AQ9NSI2 230 aaPredicted RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 RGL1Q9NZL6 768 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 FEM1BQ9UK73 627 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 TFR2Q9UP52 801 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 MRPL11Q9Y3B7 192 aaKnown RBP22.47■■□□□ 1.19
CLN3-230ENST00000568076 STK24Q9Y6E0 443 aa22.47■■□□□ 1.19
CLN3-230ENST00000568076 ASNSP08243 561 aa22.46■■□□□ 1.19
CLN3-230ENST00000568076 OTOP1Q7RTM1 612 aa22.46■■□□□ 1.19
CLN3-230ENST00000568076 LDHDQ86WU2 507 aa22.46■■□□□ 1.19
CLN3-230ENST00000568076 IQCDQ96DY2 449 aa22.46■■□□□ 1.19
CLN3-230ENST00000568076 ZNHIT6Q9NWK9 470 aaKnown RBP22.46■■□□□ 1.19
CLN3-230ENST00000568076 MYO1AQ9UBC5 1043 aa22.46■■□□□ 1.19
CLN3-230ENST00000568076 PSMD10O75832 226 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 TGFB2P61812 414 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 RASA3Q14644 834 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 ZC3H3Q8IXZ2 948 aaKnown RBP22.45■■□□□ 1.18
CLN3-230ENST00000568076 CEP63Q96MT8 703 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 SPDYE4A6NLX3 237 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 ZBTB7AO95365 584 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 HNRNPH3P31942 346 aaKnown RBP22.45■■□□□ 1.18
CLN3-230ENST00000568076 INPP5BP32019 993 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 PTGER2P43116 358 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 CDK17Q00537 523 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 RSRC2Q7L4I2 434 aaKnown RBP22.45■■□□□ 1.18
CLN3-230ENST00000568076 ZFP91Q96JP5 570 aaPredicted RBP22.45■■□□□ 1.18
CLN3-230ENST00000568076 TEPSINQ96N21 525 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 HSD17B14Q9BPX1 270 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 ZNF341Q9BYN7 854 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 TAOK3Q9H2K8 898 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 BHMT2Q9H2M3 363 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 BCAS3Q9H6U6 928 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 MMRN2Q9H8L6 949 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 GUCA1BQ9UMX6 200 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 PLAGL2Q9UPG8 496 aa22.45■■□□□ 1.18
CLN3-230ENST00000568076 CTAGE9A4FU28 777 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 KCNMA1Q12791 1236 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms