RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CCINQ13939 588 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 LMBRD2Q68DH5 695 aaPredicted RBP6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 SLC6A19Q695T7 634 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 FKBP9P1Q75LS8 142 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 PPP1R14AQ96A00 147 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 TBC1D20Q96BZ9 403 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 AHCYL2Q96HN2 611 aaKnown RBP6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 LRP2BPQ9P2M1 347 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 SUSD2Q9UGT4 822 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 CDC23Q9UJX2 597 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 FBXO10Q9UK96 956 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 CYP8B1Q9UNU6 501 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 PTPRTO14522 1441 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 TCRBV16S1A1N1A0A5B0 115 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 TRIM75PA6NK02 468 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 TOM1O60784 492 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 MMP20O60882 483 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 HSD3B1P14060 373 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 OAS2P29728 719 aaKnown RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 GSK3AP49840 483 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 GRM1Q13255 1194 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 SEPT2Q15019 361 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 PDCD2Q16342 344 aaPredicted RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 VPS53Q5VIR6 699 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 MSL1Q68DK7 614 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 SPATA31D1Q6ZQQ2 1576 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 KRT25Q7Z3Z0 450 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 NCAPG2Q86XI2 1143 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 CMIPQ8IY22 773 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 ZBTB34Q8NCN2 500 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 LRRN4CLQ8ND94 238 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 DCAF11Q8TEB1 546 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 PAWRQ96IZ0 340 aaKnown RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 WNK4Q96J92 1243 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 UBE2OQ9C0C9 1292 aaKnown RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 CBX8Q9HC52 389 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 RASSF1Q9NS23 344 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 C14orf119Q9NWQ9 140 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 ZNF214Q9UL59 606 aaPredicted RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 POLHQ9Y253 713 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 PREX1Q8TCU6 1659 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 DHX57Q6P158 1386 aaKnown RBP6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 CAMSAP1Q5T5Y3 1602 aa6.11□□□□□ -1.43
VPS35P1-201ENST00000563400 VWDEQ8N2E2 1590 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 SLC22A31A6NKX4 558 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 NCAM2O15394 837 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 XPOTO43592 962 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 INMTO95050 263 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 SELPP16109 830 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 TARSP26639 723 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 ADH7P40394 386 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 TSPAN7P41732 249 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 RRP12Q5JTH9 1297 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 INTS11Q5TA45 600 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 INTS3Q68E01 1043 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 TTLL5Q6EMB2 1281 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 LLGL2Q6P1M3 1020 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 SPOCD1Q6ZMY3 1216 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 UBE2R2Q712K3 238 aaPredicted RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 NLRC3Q7RTR2 1065 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 GPR155Q7Z3F1 870 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 SNX32Q86XE0 403 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 SMC1BQ8NDV3 1235 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 OR13H1Q8NG92 308 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 ASAP3Q8TDY4 903 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 DCAF5Q96JK2 942 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 NUP88Q99567 741 aaPredicted RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 ACO2Q99798 780 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 ISCA1Q9BUE6 129 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 AP1M1Q9BXS5 423 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 MYLK2Q9H1R3 596 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 PRKRIP1Q9H875 184 aaPredicted RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 MRGBPQ9NV56 204 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 MKS1Q9NXB0 559 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 APEX2Q9UBZ4 518 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 MAGED1Q9Y5V3 778 aaPredicted RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 KDM5AP29375 1690 aaKnown RBP6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 ZFYVE9O95405 1425 aa6.1□□□□□ -1.43
VPS35P1-201ENST00000563400 DDX3YO15523 660 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TMCC2O75069 709 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 SOD2P04179 222 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CAPNS1P04632 268 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 RAG1P15918 1043 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 KCNA6P17658 529 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 NME2P22392 152 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 FLT3P36888 993 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 RAD52P43351 418 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CLK1P49759 484 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 GABREP78334 506 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TBC1D8BQ0IIM8 1120 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 SART3Q15020 963 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TERF2Q15554 542 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TBC1D10BQ4KMP7 808 aaPredicted RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 RETSATQ6NUM9 610 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TLDC1Q6P9B6 456 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 ABHD17CQ6PCB6 329 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CASC1Q6TDU7 716 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 LINC00114Q6XXX2 140 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CCDC149Q6ZUS6 474 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 RAB44Q7Z6P3 723 aaPredicted RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms