RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 NOLC1Q14978 699 aaKnown RBP eCLIP3.43□□□□□ -1.86
SLIRP-208ENST00000556956 SYCP1Q15431 976 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 GALNT18Q6P9A2 607 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 CCDC144CPQ8IYA2 1237 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 C7orf61Q8IZ16 206 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 OR6P1Q8NGX9 317 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 GPT2Q8TD30 523 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 SH3RF3Q8TEJ3 882 aaPredicted RBP3.43□□□□□ -1.86
SLIRP-208ENST00000556956 PIBF1Q8WXW3 757 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 TSR2Q969E8 191 aaKnown RBP3.43□□□□□ -1.86
SLIRP-208ENST00000556956 PLEKHF1Q96S99 279 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 RBM15Q96T37 977 aaKnown RBP eCLIP3.43□□□□□ -1.86
SLIRP-208ENST00000556956 DSCC1Q9BVC3 393 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 FOXP3Q9BZS1 431 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 PRDM14Q9GZV8 571 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 CRTAC1Q9NQ79 661 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 DLL4Q9NR61 685 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 SPTLC3Q9NUV7 552 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.43□□□□□ -1.86
SLIRP-208ENST00000556956 EVC2Q86UK5 1308 aa3.43□□□□□ -1.86
SLIRP-208ENST00000556956 UNC13BO14795 1591 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 CFAP74Q9C0B2 1584 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 ERVK-7P63135 1459 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 ABCA9Q8IUA7 1624 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 A0A087WZG4 1122 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 A0A0U1RQG5 324 aaPredicted RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 A0A1W2PQ45 241 aaPredicted RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 A0A1W2PQY0 241 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 OR14I1A6ND48 311 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 N4BP3O15049 544 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 ERC2O15083 957 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 NRDCO43847 1150 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 DIAPH1O60610 1272 aaKnown RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 GUCY2CP25092 1073 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 POLR2BP30876 1174 aaKnown RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 GALK1P51570 392 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SLURP1P55000 103 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 RTP1P59025 263 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 FAM193AP78312 1265 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 CBX1P83916 185 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SRSF3P84103 164 aaKnown RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 LAPTM5Q13571 262 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 CCDC183Q5T5S1 534 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 LDLRAD1Q5T700 205 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 TTC22Q5TAA0 569 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 HLA-DQA1Q5Y7H0 255 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 CEP128Q6ZU80 1094 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 USP51Q70EK9 711 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 TMC3Q7Z5M5 1100 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 RPAP2Q8IXW5 612 aaPredicted RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 TMEM192Q8IY95 271 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 MAP6Q96JE9 813 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 FCRL2Q96LA5 508 aaPredicted RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SLC9A7Q96T83 725 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SLC12A5Q9H2X9 1139 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 DCTPP1Q9H773 170 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 CNTD2Q9H8S5 307 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 OGFRQ9NZT2 677 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 ZHX1Q9UKY1 873 aaPredicted RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SF3B6Q9Y3B4 125 aaKnown RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 DUSP10Q9Y6W6 482 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 NOS1P29475 1434 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 REREQ9P2R6 1566 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 SPAG9O60271 1321 aaKnown RBP3.42□□□□□ -1.86
SLIRP-208ENST00000556956 RPGRIP1LQ68CZ1 1315 aa3.42□□□□□ -1.86
SLIRP-208ENST00000556956 UHRF1BP1LA0JNW5 1464 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 IQGAP3Q86VI3 1631 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 RNF17Q9BXT8 1623 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 HRKO00198 91 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 EPB41L2O43491 1005 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 VAMP4O75379 141 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ADCY5O95622 1261 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 MPOP05164 745 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 GSPT1P15170 499 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 VAV1P15498 845 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 PNLIPP16233 465 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 EIF6P56537 245 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ANAPC15P60006 121 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 GNAI1P63096 354 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 POU4F1Q01851 419 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 GABPB1Q06547 395 aaPredicted RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 LMOD3Q0VAK6 560 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 CUL4AQ13619 759 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ZNF394Q53GI3 561 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ZNF771Q7L3S4 317 aaPredicted RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 VPS37DQ86XT2 251 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 NAT16Q8N8M0 369 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 CPLX3Q8WVH0 158 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 SEC16BQ96JE7 1060 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ZNF512BQ96KM6 892 aaPredicted RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 PWWP2AQ96N64 755 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ZNF747Q9BV97 191 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 CDADC1Q9BWV3 514 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 C14orf93Q9H972 538 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 IFT57Q9NWB7 429 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 SIRT5Q9NXA8 310 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 USP25Q9UHP3 1055 aa3.41□□□□□ -1.86
SLIRP-208ENST00000556956 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 DIS3Q9Y2L1 958 aaKnown RBP3.41□□□□□ -1.86
SLIRP-208ENST00000556956 ZDHHC9Q9Y397 364 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms