RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 EPHB4P54760 987 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 MAP4K2Q12851 820 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 PROSER1Q86XN7 944 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 KBTBD2Q8IY47 623 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 SLC16A11Q8NCK7 471 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 SH3RF3Q8TEJ3 882 aaPredicted RBP6.14□□□□□ -1.43
SCFD1-219ENST00000556413 WRNIP1Q96S55 665 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 JAM3Q9BX67 310 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 EPN3Q9H201 632 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 FTSJ1Q9UET6 329 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 TSC22D4Q9Y3Q8 395 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 A0A1W2PQU0 124 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 KRIT1O00522 736 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 B4GALT4O60513 344 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 MSCO60682 206 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 COL6A1P12109 1028 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 ERCC5P28715 1186 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-219ENST00000556413 CYP4F22Q6NT55 531 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 TRMT10BQ6PF06 316 aaKnown RBP6.13□□□□□ -1.43
SCFD1-219ENST00000556413 ARHGEF18Q6ZSZ5 1173 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 CIR1Q86X95 450 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-219ENST00000556413 KLHL36Q8N4N3 616 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 DNERQ8NFT8 737 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 PIP4K2CQ8TBX8 421 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 KCTD13Q8WZ19 329 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 KISS1RQ969F8 398 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-219ENST00000556413 PTPN18Q99952 460 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 KLC2Q9H0B6 622 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 SLC6A20Q9NP91 592 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 GPR27Q9NS67 375 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 PPARGC1AQ9UBK2 798 aaKnown RBP6.13□□□□□ -1.43
SCFD1-219ENST00000556413 ZDHHC9Q9Y397 364 aa6.13□□□□□ -1.43
SCFD1-219ENST00000556413 AGRPO00253 132 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 SLC27A2O14975 620 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 DLX3O60479 287 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 NFATC3Q12968 1075 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 PHF19Q5T6S3 580 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 TRIM48Q8IWZ4 208 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 TTLL11Q8NHH1 800 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 CLEC4DQ8WXI8 215 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.12□□□□□ -1.432e-9■□□□□ 9.9
SCFD1-219ENST00000556413 IER2Q9BTL4 223 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 ZNF408Q9H9D4 720 aa6.12□□□□□ -1.43
SCFD1-219ENST00000556413 FGRP09769 529 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 C6P13671 934 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 GRIN1Q05586 938 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 SLFN13Q68D06 897 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 RBM12BQ8IXT5 1001 aaKnown RBP6.11□□□□□ -1.43
SCFD1-219ENST00000556413 DTX3Q8N9I9 347 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 NUDT10Q8NFP7 164 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 NUDT11Q96G61 164 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 WWC2-AS2Q96NR7 200 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 SCAND2PQ9GZW5 306 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-219ENST00000556413 BARX1Q9HBU1 254 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-219ENST00000556413 JADE2Q9NQC1 790 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 SRRDQ9UH36 339 aa6.11□□□□□ -1.43
SCFD1-219ENST00000556413 TACR2P21452 398 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 VASNQ6EMK4 673 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 ZNF585AQ6P3V2 769 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 USP53Q70EK8 1073 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 OTOP3Q7RTS5 596 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 Q8N1X5 172 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 PHF20Q9BVI0 1012 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 DLL4Q9NR61 685 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 ADAM29Q9UKF5 820 aa6.1□□□□□ -1.43
SCFD1-219ENST00000556413 PATE3B3GLJ2 98 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 KLHL18O94889 574 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 GNL2Q13823 731 aaKnown RBP6.09□□□□□ -1.43
SCFD1-219ENST00000556413 RSPO2Q6UXX9 243 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-219ENST00000556413 CELF2-AS1Q8N7Q2 184 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 CDK5RAP1Q96SZ6 601 aaKnown RBP6.09□□□□□ -1.43
SCFD1-219ENST00000556413 MEGF9Q9H1U4 602 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 DEF6Q9H4E7 631 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 ST7Q9NRC1 585 aa6.09□□□□□ -1.43
SCFD1-219ENST00000556413 LTFP02788 710 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 CKMP06732 381 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 FAHP16930 419 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 TUSC3Q13454 348 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 SMAD2Q15796 467 aaKnown RBP6.08□□□□□ -1.44
SCFD1-219ENST00000556413 PAN2Q504Q3 1202 aaKnown RBP6.08□□□□□ -1.44
SCFD1-219ENST00000556413 CRIP3Q6Q6R5 217 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 LBX2Q6XYB7 198 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 Q6ZUG5 572 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 MCF2L2Q86YR7 1114 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 HNRNPLLQ8WVV9 542 aaKnown RBP6.08□□□□□ -1.44
SCFD1-219ENST00000556413 SORCS2Q96PQ0 1159 aa6.08□□□□□ -1.44
SCFD1-219ENST00000556413 PDGFDQ9GZP0 370 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-219ENST00000556413 KNG1P01042 644 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 CHGBP05060 677 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 COL6A2P12110 1019 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 GRK2P25098 689 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 GRK3P35626 688 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 HSP90AA2PQ14568 343 aaPredicted RBP6.07□□□□□ -1.44
SCFD1-219ENST00000556413 R3HDM1Q15032 1099 aaKnown RBP6.07□□□□□ -1.44
SCFD1-219ENST00000556413 KCNT2Q6UVM3 1135 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 PALM2Q8IXS6 379 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 UHMK1Q8TAS1 419 aaKnown RBP6.07□□□□□ -1.44
SCFD1-219ENST00000556413 DCAF4Q8WV16 495 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 TINF2Q9BSI4 451 aa6.07□□□□□ -1.44
SCFD1-219ENST00000556413 ZNF747Q9BV97 191 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms