RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 CAMK1Q14012 370 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 CLP1Q92989 425 aaKnown RBP11.31□□□□□ -0.6
SCFD1-215ENST00000555259 ATP6V0A1Q93050 837 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 RMDN3Q96TC7 470 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 MAF1Q9H063 256 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 CLEC1BQ9P126 229 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 ANAPC4Q9UJX5 808 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 DDX19BQ9UMR2 479 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 PLXNA3P51805 1871 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 ADGRA3Q8IWK6 1321 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 C17orf102A2RUQ5 167 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 PROB1E7EW31 1015 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 H0Y858 1186 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 TREHO43280 583 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 CAND2O75155 1236 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 EIF3JO75822 258 aaKnown RBP11.3□□□□□ -0.6
SCFD1-215ENST00000555259 HOXC8P31273 242 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 RRP1P56182 461 aaKnown RBP11.3□□□□□ -0.6
SCFD1-215ENST00000555259 HSDL1Q3SXM5 330 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 MYSM1Q5VVJ2 828 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 ASCL5Q7RTU5 278 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 ERMP1Q7Z2K6 904 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 APBB2Q92870 758 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 GPATCH3Q96I76 525 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 C16orf70Q9BSU1 422 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 FSD1Q9BTV5 496 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 RC3H2Q9HBD1 1191 aaKnown RBP11.3□□□□□ -0.6
SCFD1-215ENST00000555259 TLR9Q9NR96 1032 aa11.3□□□□□ -0.6
SCFD1-215ENST00000555259 FGRP09769 529 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 SNHG28P0DPA3 235 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 EIF2AK2P19525 551 aaKnown RBP11.29□□□□□ -0.6
SCFD1-215ENST00000555259 COASYQ13057 564 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 ZMYM1Q5SVZ6 1142 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 ARHGEF16Q5VV41 709 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 SPATA33Q96N06 139 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 TCP11L1Q9NUJ3 509 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 MYH7BA7E2Y1 1941 aa11.29□□□□□ -0.6
SCFD1-215ENST00000555259 SORBS3O60504 671 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 NR3C2P08235 984 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 SMIM10L2AP0DMW4 78 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 SMIM10L2BP0DMW5 78 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 MS4A1P11836 297 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 RRP12Q5JTH9 1297 aaKnown RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 CELF3Q5SZQ8 465 aaKnown RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 MCF2L2Q86YR7 1114 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 EFHBQ8N7U6 833 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PPP2R3CQ969Q6 453 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 RPGRIP1Q96KN7 1286 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PHF7Q9BWX1 381 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PLVAPQ9BX97 442 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 CPVLQ9H3G5 476 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 RNPEPQ9H4A4 650 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PXMP2Q9NR77 195 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 TOMM22Q9NS69 142 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PLAGL2Q9UPG8 496 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 USP15Q9Y4E8 981 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 GVINP1Q7Z2Y8 2422 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 ABCB11O95342 1321 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 PRR23AA6NEV1 266 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 H3BRB1 525 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 RGS20O76081 388 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 GGPS1O95749 300 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 GLP2RO95838 553 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 GOLGA8HP0CJ92 632 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 DNAJB1P25685 340 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 ICAM3P32942 547 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 NUBP1P53384 320 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 BTG3Q14201 252 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 CDC37Q16543 378 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 VPS53Q5VIR6 699 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 ADGRD2Q7Z7M1 963 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 UBA5Q9GZZ9 404 aa11.28□□□□□ -0.6
SCFD1-215ENST00000555259 TUT1Q9H6E5 874 aaKnown RBP11.28□□□□□ -0.6
SCFD1-215ENST00000555259 WDR87Q6ZQQ6 2873 aa11.27□□□□□ -0.6
SCFD1-215ENST00000555259 CCER2I3L3R5 266 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 FAM26DQ5JW98 314 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 P2RX5Q93086 422 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 ZNF689Q96CS4 500 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-215ENST00000555259 TTC14Q96N46 770 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 BARX2Q9UMQ3 279 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-215ENST00000555259 TRPC6Q9Y210 931 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 DMXL1Q9Y485 3027 aa11.27□□□□□ -0.61
SCFD1-215ENST00000555259 GALR2O43603 387 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-215ENST00000555259 KDM4AO75164 1064 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 PDGFBP01127 241 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-215ENST00000555259 HSPD1P10809 573 aaKnown RBP11.26□□□□□ -0.61
SCFD1-215ENST00000555259 UBA1P22314 1058 aaKnown RBP11.26□□□□□ -0.61
SCFD1-215ENST00000555259 NBL1P41271 181 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 NRIP1P48552 1158 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 SP2Q02086 613 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 PTPN21Q16825 1174 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 KCNV1Q6PIU1 500 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 SPPL3Q8TCT6 385 aa11.26□□□□□ -0.61
SCFD1-215ENST00000555259 DGKIO75912 1065 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 LGALS2P05162 132 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 ITGB1P05556 798 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 ATF7P17544 494 aaPredicted RBP11.25□□□□□ -0.61
SCFD1-215ENST00000555259 ID4P47928 161 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 NAALADL2Q58DX5 795 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms