RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GYPCP04921 128 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 POLR2MP0CAP2 368 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 KLK7P49862 253 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 SPIRE1Q08AE8 756 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 SPP2Q13103 211 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 CT47A1Q5JQC4 288 aaPredicted RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 GPBP1Q86WP2 473 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 WNK4Q96J92 1243 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 RANBP17Q9H2T7 1088 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 LIMA1Q9UHB6 759 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 BRCA1P38398 1863 aaKnown RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 A0A0U1RQJ8 604 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 ZBTB39O15060 712 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 MYL1P05976 194 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 PLA2G4BP0C869 781 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 TNNT3P45378 269 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 ATRIPQ8WXE1 791 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 HOOK2Q96ED9 719 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 PURBQ96QR8 312 aaKnown RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 CTAGE1Q96RT6 745 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 MAGEF1Q9HAY2 307 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 ABCB11O95342 1321 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 CYP3A7-CYP3A51PA0A087WV96 503 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 AKR1B15C9JRZ8 316 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 H7C1D1 291 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 DDX39AO00148 427 aaKnown RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 URI1O94763 535 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 ALAS1P13196 640 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 CYP3A7P24462 503 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 TRMT1LQ7Z2T5 733 aaKnown RBP12.99□□□□□ -0.33
SHMT2-212ENST00000554467 NELFCDQ8IXH7 590 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 CD2APQ9Y5K6 639 aa12.99□□□□□ -0.33
SHMT2-212ENST00000554467 FZD9O00144 591 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 FLOT1O75955 427 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 PBX1P40424 430 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 EPS15P42566 896 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 PSEN1P49768 467 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 TNFAIP1Q13829 316 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 ARHGAP29Q52LW3 1261 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 CNNM4Q6P4Q7 775 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 UNC13DQ70J99 1090 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 DNAJC19Q96DA6 116 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 SH2D4AQ9H788 454 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 FANCGO15287 622 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 FOSP01100 380 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-212ENST00000554467 KRT18P05783 430 aaKnown RBP12.98□□□□□ -0.33
SHMT2-212ENST00000554467 CCNE1P24864 410 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 CTTNQ14247 550 aaKnown RBP12.98□□□□□ -0.33
SHMT2-212ENST00000554467 ANKRD20A12PQ8NF67 263 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 PIGOQ8TEQ8 1089 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 CNOT6LQ96LI5 555 aaKnown RBP12.98□□□□□ -0.33
SHMT2-212ENST00000554467 WRNIP1Q96S55 665 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 PANK4Q9NVE7 773 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 COL20A1Q9P218 1284 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 FEM1BQ9UK73 627 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 MMP14P50281 582 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 COASYQ13057 564 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 ZSCAN26Q16670 478 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 CCDC125Q86Z20 511 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 SLFN12Q8IYM2 578 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 EPC1Q9H2F5 836 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 KCND1Q9NSA2 647 aa12.98□□□□□ -0.33
SHMT2-212ENST00000554467 MAGEC2Q9UBF1 373 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-212ENST00000554467 ZNF536O15090 1300 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 SPATA31C1P0DKV0 1188 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 ARP10275 920 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 MTIF2P46199 727 aaKnown RBP12.97□□□□□ -0.33
SHMT2-212ENST00000554467 IL31RAQ8NI17 732 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 DHTKD1Q96HY7 919 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-212ENST00000554467 MBOAT7Q96N66 472 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 GGA3Q9NZ52 723 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 IGLV3-22A0A075B6J6 115 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 RPS12P25398 132 aaKnown RBP12.97□□□□□ -0.33
SHMT2-212ENST00000554467 Q4G0T1 1027 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 ARSHQ5FYA8 562 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 TUBGCP2Q9BSJ2 902 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 VCAM1P19320 739 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 CASQ1P31415 396 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 MAP3K10Q02779 954 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 HERC4Q5GLZ8 1057 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-212ENST00000554467 TXLNBQ8N3L3 684 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 SLF1Q9BQI6 1058 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 EMILIN3Q9NT22 766 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 VAV3Q9UKW4 847 aa12.97□□□□□ -0.33
SHMT2-212ENST00000554467 MRPL11Q9Y3B7 192 aaKnown RBP12.97□□□□□ -0.33
SHMT2-212ENST00000554467 SFI1A8K8P3 1242 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 CYP11B2P19099 503 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 TPH2Q8IWU9 490 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 NAP1L4Q99733 375 aaKnown RBP12.96□□□□□ -0.33
SHMT2-212ENST00000554467 RPAP3Q9H6T3 665 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-212ENST00000554467 PPP2R2CQ9Y2T4 447 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 LRRC10BA6NIK2 292 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 RSPH10B2B2RC85 870 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 PIK3CDO00329 1044 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 MFAP3LO75121 409 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 RSPH10BP0C881 870 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 HIRAP54198 1017 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-212ENST00000554467 SPAG1Q07617 926 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 LRCH2Q5VUJ6 765 aa12.96□□□□□ -0.33
SHMT2-212ENST00000554467 RAD9BQ6WBX8 426 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms