RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FAM13AO94988 1023 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CTAGE8P0CG41 777 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ARP10275 920 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 NR2F2P24468 414 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ARHGAP44Q17R89 818 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 WDR59Q6PJI9 974 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 TMEM179Q6ZVK1 233 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 UNC13DQ70J99 1090 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ADAT2Q7Z6V5 191 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CTAGE6Q86UF2 777 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CTAGE4Q8IX94 777 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC17Q96LX7 622 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ZDHHC15Q96MV8 337 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 SPAG5Q96R06 1193 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 PANX2Q96RD6 677 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 REXO2Q9Y3B8 237 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 PDS5AQ29RF7 1337 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 GOLGA8IPA6NC78 632 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 GOLGA8JA6NMD2 632 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 MEIS2O14770 477 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 FTCDO95954 541 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 SLC9A1P19634 815 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 C2orf54Q08AI8 447 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 KIF5AQ12840 1032 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 COG2Q14746 738 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 DNAJC21Q5F1R6 531 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 PHLDB2Q86SQ0 1253 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC65Q8IXS2 484 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 NIM1KQ8IY84 436 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 SYCP3Q8IZU3 236 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 GOLGA1Q92805 767 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 DHTKD1Q96HY7 919 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF668Q96K58 619 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 AK8Q96MA6 479 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 RUSC1Q9BVN2 902 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ADAMTS1Q9UHI8 967 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 HDAC9Q9UKV0 1011 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 NID2Q14112 1375 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 A0A0U1RQG5 324 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MSH4O15457 936 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 GAS7O60861 476 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 FLOT1O75955 427 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 TRIM49P0CI25 452 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 TRIM49CP0CI26 452 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 INPP5BP32019 993 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 CYLC1P35663 651 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 STAT2P52630 851 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 SOX10P56693 466 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 HERVK_113P62684 666 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MKRN4PQ13434 485 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 RASA3Q14644 834 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 VWA3BQ502W6 1294 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 WDR78Q5VTH9 848 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 LRCH2Q5VUJ6 765 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 PPP1R18Q6NYC8 613 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 KRT222Q8N1A0 295 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 DAGLBQ8NCG7 672 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 JDP2Q8WYK2 163 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 PNKPQ96T60 521 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 C7orf25Q9BPX7 421 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 REEP2Q9BRK0 252 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 IFIH1Q9BYX4 1025 aaKnown RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 ARHGEF10LQ9HCE6 1279 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 CCPG1Q9ULG6 757 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 TESPA1A2RU30 521 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 RASSF10A6NK89 507 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 ZSCAN20P17040 1043 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 CYP11B2P19099 503 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 PBX1P40424 430 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 ARHGAP25P42331 645 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 CXCL9Q07325 125 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 SPP2Q13103 211 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 C15orf52Q6ZUT6 534 aaKnown RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 EEPD1Q7L9B9 569 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 FAM114A1Q8IWE2 563 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 HOOK2Q96ED9 719 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MS4A14Q96JA4 679 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MMS19Q96T76 1030 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 DHX36Q9H2U1 1008 aaKnown RBP6.18□□□□□ -1.42
LIMA1-215ENST00000552823 OGFRQ9NZT2 677 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 CDC23Q9UJX2 597 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MYO6Q9UM54 1294 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 MRFAP1Q9Y605 127 aa6.18□□□□□ -1.42
LIMA1-215ENST00000552823 LAD1O00515 517 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 NFIBO00712 420 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CETN3O15182 167 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 USO1O60763 962 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 LRRN2O75325 713 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ABCB4P21439 1286 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 EEF1GP26641 437 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 MAP3K9P80192 1104 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC181Q5TID7 509 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF772Q68DY9 489 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 NFRKBQ6P4R8 1299 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ZKSCAN4Q969J2 545 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 EIF2AK1Q9BQI3 630 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 PACSIN1Q9BY11 444 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 THAP9Q9H5L6 903 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 L2HGDHQ9H9P8 463 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms