RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FRMD5Q7Z6J6 570 aa17■□□□□ 0.31
VPS29-209ENST00000551655 RBM23Q86U06 439 aaKnown RBP17■□□□□ 0.31
VPS29-209ENST00000551655 KBTBD3Q8NAB2 608 aa17■□□□□ 0.31
VPS29-209ENST00000551655 TREHO43280 583 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 GNAT2P19087 354 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 NRIP1P48552 1158 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 COASYQ13057 564 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 PTPN21Q16825 1174 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 ADSSL1Q8N142 457 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 TMEM105Q8N8V8 129 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 PPTC7Q8NI37 304 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 ATP6V0A1Q93050 837 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 PHF7Q9BWX1 381 aaPredicted RBP16.99■□□□□ 0.31
VPS29-209ENST00000551655 NAPBQ9H115 298 aa16.99■□□□□ 0.31
VPS29-209ENST00000551655 RC3H2Q9HBD1 1191 aaKnown RBP16.99■□□□□ 0.31
VPS29-209ENST00000551655 RANBP6O60518 1105 aaKnown RBP16.98■□□□□ 0.31
VPS29-209ENST00000551655 RAB11FIP3O75154 756 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 SP100P23497 879 aaPredicted RBP16.98■□□□□ 0.31
VPS29-209ENST00000551655 ICAM3P32942 547 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 EFHBQ8N7U6 833 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 SYTL5Q8TDW5 730 aaPredicted RBP16.98■□□□□ 0.31
VPS29-209ENST00000551655 CPVLQ9H3G5 476 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 PLAGL2Q9UPG8 496 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 ZNF292O60281 2723 aa16.98■□□□□ 0.31
VPS29-209ENST00000551655 B4DLN1 442 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 SLC3A2P08195 630 aaKnown RBP16.97■□□□□ 0.31
VPS29-209ENST00000551655 EIF2AK2P19525 551 aaKnown RBP16.97■□□□□ 0.31
VPS29-209ENST00000551655 NOVP48745 357 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 MRPL12P52815 198 aaKnown RBP16.97■□□□□ 0.31
VPS29-209ENST00000551655 HSDL1Q3SXM5 330 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 CLP1Q92989 425 aaKnown RBP16.97■□□□□ 0.31
VPS29-209ENST00000551655 EMID1Q96A84 441 aaPredicted RBP16.97■□□□□ 0.31
VPS29-209ENST00000551655 RIPOR3Q96MK2 946 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 MRVI1Q9Y6F6 885 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 PLXNA4Q9HCM2 1894 aa16.97■□□□□ 0.31
VPS29-209ENST00000551655 KMT2BQ9UMN6 2715 aaPredicted RBP16.96■□□□□ 0.31
VPS29-209ENST00000551655 C17orf102A2RUQ5 167 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 ITGB1P05556 798 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 HOXD8P13378 290 aaPredicted RBP16.96■□□□□ 0.31
VPS29-209ENST00000551655 LAMC2Q13753 1193 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 BTG3Q14201 252 aaPredicted RBP16.96■□□□□ 0.31
VPS29-209ENST00000551655 STXBP2Q15833 593 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 TMEM47Q9BQJ4 181 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 C16orf70Q9BSU1 422 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 NACAP1Q9BZK3 213 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 SMOC2Q9H3U7 446 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 SUPT16HQ9Y5B9 1047 aaKnown RBP16.96■□□□□ 0.31
VPS29-209ENST00000551655 EPG5Q9HCE0 2579 aa16.96■□□□□ 0.31
VPS29-209ENST00000551655 WDR19Q8NEZ3 1342 aa16.96■□□□□ 0.3
VPS29-209ENST00000551655 FOXP2O15409 715 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 SMIM10L2AP0DMW4 78 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 SMIM10L2BP0DMW5 78 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 PDHBP11177 359 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 PPP4R3BQ5MIZ7 849 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 ZBTB33Q86T24 672 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 VN1R2Q8NFZ6 395 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 SPPL3Q8TCT6 385 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 NSUN6Q8TEA1 469 aaKnown RBP16.95■□□□□ 0.3
VPS29-209ENST00000551655 NKD2Q969F2 451 aaPredicted RBP16.95■□□□□ 0.3
VPS29-209ENST00000551655 RMDN3Q96TC7 470 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 RWDD3Q9Y3V2 267 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 MRPL42Q9Y6G3 142 aaKnown RBP16.95■□□□□ 0.3
VPS29-209ENST00000551655 NCOR2Q9Y618 2525 aa16.95■□□□□ 0.3
VPS29-209ENST00000551655 PER2O15055 1255 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 GOLGA8HP0CJ92 632 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 ARP10275 920 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 HOXC8P31273 242 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 ZNF689Q96CS4 500 aaPredicted RBP16.94■□□□□ 0.3
VPS29-209ENST00000551655 ZFP91Q96JP5 570 aaPredicted RBP16.94■□□□□ 0.3
VPS29-209ENST00000551655 SPATA33Q96N06 139 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 APOL5Q9BWW9 433 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 RNPEPQ9H4A4 650 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 ECHDC1Q9NTX5 307 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 FRYLO94915 3013 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 ZFHX4Q86UP3 3567 aa16.94■□□□□ 0.3
VPS29-209ENST00000551655 HMMRO75330 724 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 GHRP10912 638 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 SP2Q02086 613 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 ZNF543Q08ER8 600 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 MYSM1Q5VVJ2 828 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 KLHL23Q8NBE8 558 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 POF1BQ8WVV4 589 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 SUSD6Q92537 303 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 APBB2Q92870 758 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 RMDN1Q96DB5 314 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 UBA5Q9GZZ9 404 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 BCAS3Q9H6U6 928 aa16.93■□□□□ 0.3
VPS29-209ENST00000551655 PPFIA4O75335 1185 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 GGPS1O95749 300 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 TOP1P11387 765 aaKnown RBP16.92■□□□□ 0.3
VPS29-209ENST00000551655 NUBP1P53384 320 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 PAN2Q504Q3 1202 aaKnown RBP16.92■□□□□ 0.3
VPS29-209ENST00000551655 ARHGEF16Q5VV41 709 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 KREMEN2Q8NCW0 462 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 RGS22Q8NE09 1264 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 GPKOWQ92917 476 aaPredicted RBP eCLIP16.92■□□□□ 0.3
VPS29-209ENST00000551655 PPP2R3CQ969Q6 453 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 IWS1Q96ST2 819 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 PLVAPQ9BX97 442 aa16.92■□□□□ 0.3
VPS29-209ENST00000551655 SETD4Q9NVD3 440 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms