RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 PLEKHG2Q9H7P9 1386 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 COL18A1P39060 1754 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 AKAP12Q02952 1782 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 ZNF536O15090 1300 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 USP6P35125 1406 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 ITSN1Q15811 1721 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 CHURC1-FNTBB4DL54 471 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 SRGAP3O43295 1099 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 PRAMEF1O95521 474 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 GCP02774 474 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 MAPK1P28482 360 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 LIG3P49916 1009 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 INHBEP58166 350 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 EVA1CP58658 441 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 ZC3H6P61129 1189 aaKnown RBP3.45□□□□□ -1.86
PTCH1-223ENST00000551623 RNF4P78317 190 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 MVKQ03426 396 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 SNW1Q13573 536 aaKnown RBP3.45□□□□□ -1.86
PTCH1-223ENST00000551623 CCDC85BQ15834 202 aaPredicted RBP3.45□□□□□ -1.86
PTCH1-223ENST00000551623 TTLL7Q6ZT98 887 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 B3GNT8Q7Z7M8 397 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 PHACTR4Q8IZ21 702 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 LGI4Q8N135 537 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 ADAMTS17Q8TE56 1095 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 PRAM1Q96QH2 718 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 CDADC1Q9BWV3 514 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 KLC2Q9H0B6 622 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 SPATA6Q9NWH7 488 aaPredicted RBP3.45□□□□□ -1.86
PTCH1-223ENST00000551623 STK26Q9P289 416 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 KLHL3Q9UH77 587 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 SPG7Q9UQ90 795 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 TNFRSF18Q9Y5U5 241 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 CCDC7Q96M83 1385 aa3.45□□□□□ -1.86
PTCH1-223ENST00000551623 CPSF1Q10570 1443 aaKnown RBP3.44□□□□□ -1.86
PTCH1-223ENST00000551623 PCSK5Q92824 1860 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 A0A1W2PQ27 194 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 A0A1W2PQ64 194 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 A0A1W2PQC6 194 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 A0A1W2PQD8 194 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 ASGR2P07307 311 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 TFE3P19532 575 aaPredicted RBP3.44□□□□□ -1.86
PTCH1-223ENST00000551623 GBP1P32455 592 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 ALG1LQ6GMV1 187 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 KIF2CQ99661 725 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 NMRK2Q9NPI5 230 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 BIN2Q9UBW5 565 aaPredicted RBP3.44□□□□□ -1.86
PTCH1-223ENST00000551623 BTAF1O14981 1849 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 TUBGCP6Q96RT7 1819 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 PPIP5K1Q6PFW1 1433 aa3.44□□□□□ -1.86
PTCH1-223ENST00000551623 NSD2O96028 1365 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 SIGLEC6O43699 453 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 P4HBP07237 508 aaKnown RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 HMGB2P26583 209 aaKnown RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 MAPK8P45983 427 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 PRR5P85299 388 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 PURAQ00577 322 aaKnown RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 KIAA2012Q0VF49 1180 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 FHL2Q14192 279 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 ICAM4Q14773 271 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 MAP3K11Q16584 847 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 NBPF9Q3BBW0 867 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 RGL3Q3MIN7 710 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 PALM2Q8IXS6 379 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 TMEM52Q8NDY8 209 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 NGDNQ8NEJ9 315 aaKnown RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 JARID2Q92833 1246 aaPredicted RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 NOX5Q96PH1 765 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 REV1Q9UBZ9 1251 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 MINPP1Q9UNW1 487 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 LY75O60449 1722 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 KIAA1551Q9HCM1 1747 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 KDM6AO15550 1401 aaPredicted RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 IGSF1Q8N6C5 1336 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 PIK3C2AO00443 1686 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 USP54Q70EL1 1684 aa3.43□□□□□ -1.86
PTCH1-223ENST00000551623 TNRC6CQ9HCJ0 1690 aaKnown RBP3.43□□□□□ -1.86
PTCH1-223ENST00000551623 F8W031 263 aaPredicted RBP3.42□□□□□ -1.86
PTCH1-223ENST00000551623 EXOC5O00471 708 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ZNF205O95201 554 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 BMP8BP34820 402 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 FAM50AQ14320 339 aaKnown RBP3.42□□□□□ -1.86
PTCH1-223ENST00000551623 BORAQ6PGQ7 559 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ARHGEF25Q86VW2 580 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 SMC1BQ8NDV3 1235 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 SMARCC2Q8TAQ2 1214 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ALG3Q92685 438 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ABHD8Q96I13 439 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 CD248Q9HCU0 757 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 TFCP2L1Q9NZI6 479 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 TIMELESSQ9UNS1 1208 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 IVNS1ABPQ9Y6Y0 642 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 NFAT5O94916 1531 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 KIF13BQ9NQT8 1826 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ACEP12821 1306 aa3.42□□□□□ -1.86
PTCH1-223ENST00000551623 WDR33Q9C0J8 1336 aaKnown RBP3.42□□□□□ -1.86
PTCH1-223ENST00000551623 ANKRD36BQ8N2N9 1353 aa3.41□□□□□ -1.86
PTCH1-223ENST00000551623 A0A1W2PQJ5 194 aa3.41□□□□□ -1.86
PTCH1-223ENST00000551623 MROH6A6NGR9 719 aa3.41□□□□□ -1.86
PTCH1-223ENST00000551623 RGS13O14921 159 aa3.41□□□□□ -1.86
PTCH1-223ENST00000551623 FOXN1O15353 648 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms