RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.44■□□□□ 0.22
CUX1-214ENST00000550008 ADGRG1Q9Y653 693 aa16.44■□□□□ 0.22
CUX1-214ENST00000550008 AFPP02771 609 aaKnown RBP16.43■□□□□ 0.22
CUX1-214ENST00000550008 VEGFAP15692 232 aaPredicted RBP16.43■□□□□ 0.22
CUX1-214ENST00000550008 LIG4P49917 911 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 GUCY2DQ02846 1103 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 BRD3Q15059 726 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 SEPT14Q6ZU15 432 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 MCF2L2Q86YR7 1114 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 HDAC6Q9UBN7 1215 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 ASIC3Q9UHC3 531 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 SEPT9Q9UHD8 586 aaPredicted RBP16.43■□□□□ 0.22
CUX1-214ENST00000550008 AMFRQ9UKV5 643 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 KRIT1O00522 736 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 SLC7A5Q01650 507 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 DPYDQ12882 1025 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 COASYQ13057 564 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 C10orf67Q8IYJ2 551 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 MAP3K14Q99558 947 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 SPZ1Q9BXG8 430 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 GNPTABQ3T906 1256 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 RCSD1Q6JBY9 416 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 OTUD6AQ7L8S5 288 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 CCDC105Q8IYK2 499 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 CEP170P1Q96L14 293 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 PARVGQ9HBI0 331 aa16.43■□□□□ 0.22
CUX1-214ENST00000550008 TCP1P17987 556 aaKnown RBP16.42■□□□□ 0.22
CUX1-214ENST00000550008 RAD54LQ92698 747 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 CRAMP1Q96RY5 1269 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 KRT12Q99456 494 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 NBPF3Q9H094 633 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 KCNK9Q9NPC2 374 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 PLEKHG2Q9H7P9 1386 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 NDUFB10O96000 172 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 IGBP1P78318 339 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 GRIK5Q16478 980 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 MCTP2Q6DN12 878 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 NACC1Q96RE7 527 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 MTRF1LQ9UGC7 380 aaKnown RBP16.42■□□□□ 0.22
CUX1-214ENST00000550008 ANAPC4Q9UJX5 808 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 GYS2P54840 703 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 SPP2Q13103 211 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 C16orf86Q6ZW13 317 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 KSR1Q8IVT5 923 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 IVNS1ABPQ9Y6Y0 642 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 ABCB11O95342 1321 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 GPR75-ASB3A0A0A6YYF3 556 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 LRRC53A6NM62 1247 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 SLURP2P0DP57 97 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 ATP1A2P50993 1020 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 DCUN1D2Q6PH85 259 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 RETREG2Q8NC44 543 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 WDR11Q9BZH6 1224 aa16.42■□□□□ 0.22
CUX1-214ENST00000550008 DKC1O60832 514 aaKnown RBP eCLIP16.41■□□□□ 0.221e-7■■■■■ 38.7
CUX1-214ENST00000550008 ASNSP08243 561 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 POLGP54098 1239 aaPredicted RBP16.41■□□□□ 0.22
CUX1-214ENST00000550008 TTC19Q6DKK2 380 aaPredicted RBP16.41■□□□□ 0.22
CUX1-214ENST00000550008 UBL4BQ8N7F7 174 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 TTC16Q8NEE8 873 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 TFR2Q9UP52 801 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 UTP11Q9Y3A2 253 aaKnown RBP16.41■□□□□ 0.22
CUX1-214ENST00000550008 FAM205AQ6ZU69 1335 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 EBAG9O00559 213 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 PSMC2P35998 433 aaKnown RBP16.41■□□□□ 0.22
CUX1-214ENST00000550008 MYL7Q01449 175 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 PAK2Q13177 524 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 DMP1Q13316 513 aaPredicted RBP16.41■□□□□ 0.22
CUX1-214ENST00000550008 MESDQ14696 234 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 PRAMEF18Q5VWM3 479 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 KCTD16Q68DU8 428 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 DYDC2Q96IM9 177 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 LRRC63Q05C16 580 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 SLC10A5Q5PT55 438 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 AS3MTQ9HBK9 375 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 MAD2L2Q9UI95 211 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 PCDHA13Q9Y5I0 950 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 PEAK1Q9H792 1746 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 C3P01024 1663 aa16.41■□□□□ 0.22
CUX1-214ENST00000550008 CD44P16070 742 aaKnown RBP16.4■□□□□ 0.22
CUX1-214ENST00000550008 PKN1Q16512 942 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 CPLX4Q7Z7G2 160 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 ST7Q9NRC1 585 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 TRPC6Q9Y210 931 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 MTERF2Q49AM1 385 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 SULF1Q8IWU6 871 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 TAB3Q8N5C8 712 aaPredicted RBP16.4■□□□□ 0.22
CUX1-214ENST00000550008 DCAF4Q8WV16 495 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 PLCD4Q9BRC7 762 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 AGPAT5Q9NUQ2 364 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 TRIM10Q9UDY6 481 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 PEX3P56589 373 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 PIK3C2AO00443 1686 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 MYMKA6NI61 221 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 GFPT1Q06210 699 aaPredicted RBP16.4■□□□□ 0.22
CUX1-214ENST00000550008 IQCDQ96DY2 449 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 PPP1R16BQ96T49 567 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 ADD3Q9UEY8 706 aaKnown RBP16.4■□□□□ 0.22
CUX1-214ENST00000550008 IKBKGQ9Y6K9 419 aa16.4■□□□□ 0.22
CUX1-214ENST00000550008 NDUFAB1O14561 156 aa16.39■□□□□ 0.21
CUX1-214ENST00000550008 TAL1P17542 331 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms