RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 KLK7P49862 253 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 ZBED6P86452 979 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 CDK17Q00537 523 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 MAN2A1Q16706 1144 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 ZNF662Q6ZS27 426 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 SYT2Q8N9I0 419 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 POLR3CQ9BUI4 534 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 PIM2Q9P1W9 311 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 POTEFA5A3E0 1075 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 PHF20L1A8MW92 1017 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 NDUFA10O95299 355 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 POTEIP0CG38 1075 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 ZNF280AP59817 542 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 ELF2Q15723 593 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 POTEGQ6S5H5 508 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 POTEEQ6S8J3 1075 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 FGFBP2Q9BYJ0 223 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 FEM1BQ9UK73 627 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 EPN1Q9Y6I3 576 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 TADA3O75528 432 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 HNRNPH3P31942 346 aaKnown RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 MARSP56192 900 aaKnown RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 SF3B2Q13435 895 aaKnown RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 LRRC41Q15345 812 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 TSG101Q99816 390 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 IRX2Q9BZI1 471 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 KCTD10Q9H3F6 313 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 NDST4Q9H3R1 872 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 MYOZ2Q9NPC6 264 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 LZTFL1Q9NQ48 299 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 AGPAT5Q9NUQ2 364 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.3■□□□□ 0.04
RTN3-210ENST00000540798 MYO1AQ9UBC5 1043 aa15.3■□□□□ 0.04
RTN3-210ENST00000540798 PTGER2P43116 358 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 NBPF9Q3BBW0 867 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 FKBP15Q5T1M5 1219 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 CYP2W1Q8TAV3 490 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 UIMC1Q96RL1 719 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 WDR18Q9BV38 432 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.29■□□□□ 0.04
RTN3-210ENST00000540798 V9GYY5 206 aaPredicted RBP15.29■□□□□ 0.04
RTN3-210ENST00000540798 PARP14Q460N5 1801 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 NPHP3-ACAD11A0A0J9YXS1 232 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 GIT2Q14161 759 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 CIAPIN1Q6FI81 312 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 NCAPH2Q6IBW4 605 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 ZNF397Q8NF99 534 aaPredicted RBP15.29■□□□□ 0.04
RTN3-210ENST00000540798 CEP63Q96MT8 703 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 LOXHD1Q8IVV2 1947 aa15.29■□□□□ 0.04
RTN3-210ENST00000540798 GCOM1H8Y6P7 765 aaPredicted RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 KIF5CO60282 957 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 ASNSP08243 561 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 POLR2MP0CAP2 368 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 PSMC6P62333 389 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 MIGA2Q7L4E1 593 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 SCFD1Q8WVM8 642 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 TBC1D5Q92609 795 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 SLC5A5Q92911 643 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 TEPSINQ96N21 525 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 GLIS2Q9BZE0 524 aaPredicted RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 MRPL11Q9Y3B7 192 aaKnown RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 EFCAB8A8MWE9 144 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 PES1O00541 588 aaKnown RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 FKBP3Q00688 224 aaKnown RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 EPM2AIP1Q7L775 607 aaPredicted RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 PSMD10O75832 226 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 H2AFXP16104 143 aaPredicted RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 TRIM21P19474 475 aaKnown RBP15.28■□□□□ 0.04
RTN3-210ENST00000540798 GHRHRQ02643 423 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 PPP2R5CQ13362 524 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 ERCC6LQ2NKX8 1250 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 SLF1Q9BQI6 1058 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 DNM3Q9UQ16 869 aa15.28■□□□□ 0.04
RTN3-210ENST00000540798 ABL1P00519 1130 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 UTP14CQ5TAP6 766 aaKnown RBP15.27■□□□□ 0.04
RTN3-210ENST00000540798 CCDC174Q6PII3 467 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 OTOP1Q7RTM1 612 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 CCDC170Q8IYT3 715 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 HSD17B14Q9BPX1 270 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 CARD6Q9BX69 1037 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 COL4A3BPQ9Y5P4 624 aa15.27■□□□□ 0.04
RTN3-210ENST00000540798 SHTN1A0MZ66 631 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 EML1O00423 815 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 SSBP05455 408 aaKnown RBP eCLIP15.27■□□□□ 0.03
RTN3-210ENST00000540798 HERVK_113P62684 666 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 ARHGAP27Q6ZUM4 889 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 EIF2AK1Q9BQI3 630 aaKnown RBP15.27■□□□□ 0.03
RTN3-210ENST00000540798 TAOK3Q9H2K8 898 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 GINM1Q9NU53 330 aa15.27■□□□□ 0.03
RTN3-210ENST00000540798 DOCK1Q14185 1865 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 ZNF536O15090 1300 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 KIF20AO95235 890 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 CFBP00751 764 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 HSD17B4P51659 736 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 TUBB2AQ13885 445 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EDRF1Q3B7T1 1238 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 DALRD3Q5D0E6 543 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 HERC4Q5GLZ8 1057 aaPredicted RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 PPP4R3CPQ6ZMV5 832 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 CCDC84Q86UT8 332 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms