RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MYH3P11055 1940 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 LOC102724428A0A0B4J2F2 783 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 LDHBP07195 334 aaKnown RBP12.36□□□□□ -0.43
SYNE1-237ENST00000539504 SIK1P57059 783 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 FAM26FQ5R3K3 315 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 LRRC55Q6ZSA7 311 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 CEP57Q86XR8 500 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 COA7Q96BR5 231 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 NUDT12Q9BQG2 462 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 LZTS2Q9BRK4 669 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 TAF1DQ9H5J8 278 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-237ENST00000539504 RIC8AQ9NPQ8 531 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 PALM3A6NDB9 673 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-237ENST00000539504 TLR2O60603 784 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 TMOD1P28289 359 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 ASTE1Q2TB18 679 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-237ENST00000539504 SPTY2D1Q68D10 685 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-237ENST00000539504 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 RAD54LQ92698 747 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 GJA10Q969M2 543 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 LRRC45Q96CN5 670 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 PNMA5Q96PV4 448 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 TRIM31Q9BZY9 425 aa12.36□□□□□ -0.43
SYNE1-237ENST00000539504 GRID2IPA4D2P6 1211 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 FAM107AO95990 144 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 IFFO1Q0D2I5 559 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 SLC18A3Q16572 532 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 PIK3R5Q8WYR1 880 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 EYA3Q99504 573 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 LRRC27Q9C0I9 530 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 PANK4Q9NVE7 773 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 FRMPD2Q68DX3 1309 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-237ENST00000539504 FSBPO95073 299 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 BAG3O95817 575 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 HERC4Q5GLZ8 1057 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-237ENST00000539504 MEI1Q5TIA1 1274 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 KCNK18Q7Z418 384 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 EDEM3Q9BZQ6 932 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 DDX47Q9H0S4 455 aaKnown RBP12.35□□□□□ -0.43
SYNE1-237ENST00000539504 SLC37A4O43826 429 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 HSD17B3P37058 310 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 HSPA2P54652 639 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 ERVK-9P63128 1117 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 CYFIP2Q96F07 1278 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 CXorf56Q9H5V9 222 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 NOVA2Q9UNW9 492 aaKnown RBP12.35□□□□□ -0.43
SYNE1-237ENST00000539504 DCCP43146 1447 aa12.35□□□□□ -0.43
SYNE1-237ENST00000539504 CICQ96RK0 1608 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-237ENST00000539504 ACTN3Q08043 901 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-237ENST00000539504 COASYQ13057 564 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 TCERG1LQ5VWI1 586 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 SMIM5Q71RC9 77 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 CPLX4Q7Z7G2 160 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 TXNRD3Q86VQ6 643 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 CCDC13Q8IYE1 715 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 SCLT1Q96NL6 688 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 INPP4AQ96PE3 977 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-237ENST00000539504 KLC4Q9NSK0 619 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ZNF142P52746 1687 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-237ENST00000539504 KRIT1O00522 736 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 FNTAP49354 379 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ITGB3BPQ13352 177 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-237ENST00000539504 PRPF4BQ13523 1007 aaKnown RBP12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ITPK1Q13572 414 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 KRT71Q3SY84 523 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 RUFY4Q6ZNE9 571 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 DPH5Q9H2P9 285 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ZNF287Q9HBT7 754 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 TMBIM4Q9HC24 238 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 PAPPAQ13219 1627 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 SLIT2O94813 1529 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 GMNCA6NCL1 334 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 MREGQ8N565 214 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ANKS1AQ92625 1134 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ANKIB1Q9P2G1 1089 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ABCB11O95342 1321 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 MYH13Q9UKX3 1938 aa12.34□□□□□ -0.43
SYNE1-237ENST00000539504 ACTN1P12814 892 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 HSPA9P38646 679 aaKnown RBP12.33□□□□□ -0.43
SYNE1-237ENST00000539504 ADCY7P51828 1080 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 EIF6P56537 245 aaKnown RBP12.33□□□□□ -0.43
SYNE1-237ENST00000539504 ADAM9Q13443 819 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 CD302Q8IX05 232 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 DHX37Q8IY37 1157 aaKnown RBP12.33□□□□□ -0.43
SYNE1-237ENST00000539504 NLRP3Q96P20 1036 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 SPZ1Q9BXG8 430 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 FBXL5Q9UKA1 691 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 BCORQ6W2J9 1755 aa12.33□□□□□ -0.43
SYNE1-237ENST00000539504 DOCK2Q92608 1830 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 CHUKO15111 745 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 SART1O43290 800 aaKnown RBP12.33□□□□□ -0.44
SYNE1-237ENST00000539504 NOL4O94818 638 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 CCDC172P0C7W6 258 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 KCNQ4P56696 695 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 PEX26Q7Z412 305 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 PROM2Q8N271 834 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 ISCUQ9H1K1 167 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 GOPCQ9HD26 462 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 GPCPD1Q9NPB8 672 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 RAD21O60216 631 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms