RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 TEX2Q8IWB9 1127 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 PRPF38AQ8NAV1 312 aaKnown RBP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 ZNF526Q8TF50 670 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 CLUHP3Q96NS8 147 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 IPPKQ9H8X2 491 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 HOMER2Q9NSB8 354 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 CATSPERZQ9NTU4 200 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 F8W031 263 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 SEMA7AO75326 666 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 TADA3O75528 432 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 DNAJC8O75937 253 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 NTRK1P04629 796 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 CNGA1P29973 690 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 GJA4P35212 333 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 CDKN1CP49918 316 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-210ENST00000534172 STEAP3Q658P3 488 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 NLRP10Q86W26 655 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 SIRT2Q8IXJ6 389 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 ANP32EQ9BTT0 268 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 RNF38Q9H0F5 515 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 CAAP1Q9H8G2 361 aa4.7□□□□□ -1.66
CSMD3-210ENST00000534172 POU3F3P20264 500 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 TACR1P25103 407 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 CFAP100Q494V2 611 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 LRRTM3Q86VH5 581 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 THNSL2Q86YJ6 484 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 FMNL3Q8IVF7 1028 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 TTLL11Q8NHH1 800 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 UHMK1Q8TAS1 419 aaKnown RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 CHAC2Q8WUX2 184 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 SCLYQ96I15 445 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 CDIP1Q9H305 208 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 ATP8A1Q9Y2Q0 1164 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 PCDHB4Q9Y5E5 795 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 TNPO3Q9Y5L0 923 aaKnown RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 CCDC66A2RUB6 948 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 PAX4O43316 350 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 RASGRP1O95267 797 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 MAP4K4O95819 1239 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 OCRLQ01968 901 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 MCTP1Q6DN14 999 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 TMED8Q6PL24 325 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 FBXO15Q8NCQ5 510 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 WNK4Q96J92 1243 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 DCP1AQ9NPI6 582 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-210ENST00000534172 KLHL14Q9P2G3 628 aa4.69□□□□□ -1.66
CSMD3-210ENST00000534172 ABCC10Q5T3U5 1492 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CEP164Q9UPV0 1460 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 IRS4O14654 1257 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 MYCLP1P12525 358 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 PFKLP17858 780 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 FPR2P25090 351 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 NEK4P51957 841 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CDCA2Q69YH5 1023 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 RPTNQ6XPR3 784 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CEP89Q96ST8 783 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 PPP1R16BQ96T49 567 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SIRT5Q9NXA8 310 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SAMD15Q9P1V8 674 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 THRAP3Q9Y2W1 955 aaKnown RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SMARCA4P51532 1647 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 MED1Q15648 1581 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 TEX51A0A1B0GUA7 166 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CCDC194A0A1B0GVG4 234 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 NUDT19A8MXV4 375 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CKMP06732 381 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SRGAP2CP0DJJ0 459 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SDSP20132 328 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 STAT3P40763 770 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 DNM2P50570 870 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 SART3Q15020 963 aaKnown RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 FIGNQ5HY92 759 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 TMEM132EQ6IEE7 984 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CNNM4Q6P4Q7 775 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 FGD2Q7Z6J4 655 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 BHLHE22Q8NFJ8 381 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-210ENST00000534172 CPA5Q8WXQ8 436 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 DSEQ9UL01 958 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 ZKSCAN5Q9Y2L8 839 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 GAPVD1Q14C86 1478 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 IFT140Q96RY7 1462 aa4.68□□□□□ -1.66
CSMD3-210ENST00000534172 DIP2BQ9P265 1576 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 A0A087X0B3 334 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 ZC3H12DA2A288 527 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 LRRC10BA6NIK2 292 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 NCAM1P13591 858 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 EPHA5P54756 1037 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 PLEKHN1Q494U1 663 aaPredicted RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 TMEM177Q53S58 311 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 DDX46Q7L014 1031 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 PASD1Q8IV76 773 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 C2orf69Q8N8R5 385 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 OR2W6PQ8NHA6 318 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 KCNJ15Q99712 375 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 JAM3Q9BX67 310 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 NSUN3Q9H649 340 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 HSPBP1Q9NZL4 362 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 MYOTQ9UBF9 498 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 ASH2LQ9UBL3 628 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms