RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ABHD14A-ACY1A0A1B0GW23 586 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 PRR33A8MZF0 331 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 AP5Z1O43299 807 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 RANBP6O60518 1105 aaKnown RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 LIG1P18858 919 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 DEFB103AP81534 67 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 GPNMBQ14956 572 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 CHST3Q7LGC8 479 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 DHX38Q92620 1227 aaKnown RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 BRF1Q92994 677 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 GTF3C6Q969F1 213 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 CTAGE1Q96RT6 745 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 RAD9AQ99638 391 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 GPCPD1Q9NPB8 672 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 INCENPQ9NQS7 918 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 USP25Q9UHP3 1055 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 RALGAPA2Q2PPJ7 1873 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 NLRC5Q86WI3 1866 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 FGRP09769 529 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 RPS6P62753 249 aaKnown RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 SCRN1Q12765 414 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 PUS10Q3MIT2 529 aaKnown RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 GDF6Q6KF10 455 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 CCDC62Q6P9F0 684 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 FAM178BQ8IXR5 827 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 RGS22Q8NE09 1264 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 TMEM47Q9BQJ4 181 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 SUGCTQ9HAC7 445 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 TCP11L1Q9NUJ3 509 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 MYH6P13533 1939 aa9.44□□□□□ -0.9
NEDD8-207ENST00000533242 FRMPD2Q68DX3 1309 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-207ENST00000533242 ARIH2O95376 493 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 GJB5O95377 273 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 CTDNEP1O95476 244 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 GH1P01241 217 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 MMP3P08254 477 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 HSPD1P10809 573 aaKnown RBP9.43□□□□□ -0.9
NEDD8-207ENST00000533242 ALX1Q15699 326 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 AFG1LQ8WV93 481 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 U3KPZ7 1027 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-207ENST00000533242 LINC01553A4QN01 128 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 NBNO60934 754 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 CKBP12277 381 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 FOSBP53539 338 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 CHMP4BP1P59074 171 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 ARHGAP1Q07960 439 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 ANKRD1Q15327 319 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 TMCO2Q7Z6W1 182 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-207ENST00000533242 GJD3Q8N144 294 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 KAT2BQ92831 832 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 ATP6V1DQ9Y5K8 247 aa9.43□□□□□ -0.9
NEDD8-207ENST00000533242 TRANK1O15050 2925 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 COL4A6Q14031 1691 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 PDHBP11177 359 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ALADP13716 330 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ZNF543Q08ER8 600 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 APOBRQ0VD83 1088 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 PTK7Q13308 1070 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 IKBKEQ14164 716 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 TCTN1Q2MV58 587 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ALYREFQ86V81 257 aaKnown RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 NCOA5Q9HCD5 579 aaKnown RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 GTF2IRD1Q9UHL9 959 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ZKSCAN5Q9Y2L8 839 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 CHD7Q9P2D1 2997 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 MSNP26038 577 aaKnown RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 PSEN2P49810 448 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 KRT32Q14532 448 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 CAMK4Q16566 473 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 TRIM71Q2Q1W2 868 aaKnown RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 HS1BP3Q53T59 392 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 FBXO22Q8NEZ5 403 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 PGBD1Q96JS3 809 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ZNF830Q96NB3 372 aaPredicted RBP9.42□□□□□ -0.9
NEDD8-207ENST00000533242 KATNAL1Q9BW62 490 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 KCNH6Q9H252 994 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 MTUS1Q9ULD2 1270 aa9.42□□□□□ -0.9
NEDD8-207ENST00000533242 ATG2AQ2TAZ0 1938 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 GRXCR2A6NFK2 248 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 E7EWF7 191 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 SNHG28P0DPA3 235 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 KCNA5P22460 613 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 SSTR3P32745 418 aaPredicted RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 CCT2P78371 535 aaKnown RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 KRT85P78386 507 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 EXOSC10Q01780 885 aaKnown RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 RESTQ13127 1097 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 DGKDQ16760 1214 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 PTCRAQ6ISU1 281 aaPredicted RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 TRAF7Q6Q0C0 670 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 NSUN7Q8NE18 718 aaKnown RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 EMID1Q96A84 441 aaPredicted RBP9.41□□□□□ -0.9
NEDD8-207ENST00000533242 SAMD11Q96NU1 681 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 IWS1Q96ST2 819 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 HELLSQ9NRZ9 838 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 HDAC6Q9UBN7 1215 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 CTNNA3Q9UI47 895 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 INSL6Q9Y581 213 aa9.41□□□□□ -0.9
NEDD8-207ENST00000533242 ABCB11O95342 1321 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms