RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FILIP1LQ4L180 1135 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 USP50Q70EL3 339 aaPredicted RBP23.09■■□□□ 1.29
VPS28-209ENST00000528142 KCTD17Q8N5Z5 321 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 TRIM47Q96LD4 638 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 TRERF1Q96PN7 1200 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 HSD17B14Q9BPX1 270 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 SRRTQ9BXP5 876 aaKnown RBP23.09■■□□□ 1.29
VPS28-209ENST00000528142 TMX1Q9H3N1 280 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 POTEJP0CG39 1038 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 BCRP11274 1271 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 COPB1P53618 953 aaKnown RBP23.08■■□□□ 1.29
VPS28-209ENST00000528142 MAP3K9P80192 1104 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 COASYQ13057 564 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 COG2Q14746 738 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 ARSHQ5FYA8 562 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 SH3D19Q5HYK7 790 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 CENPPQ6IPU0 288 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 B3GNT9Q6UX72 402 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 SLC30A10Q6XR72 485 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 CATSPERGQ6ZRH7 1159 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 GPBP1Q86WP2 473 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 GUF1Q8N442 669 aaKnown RBP23.08■■□□□ 1.29
VPS28-209ENST00000528142 IL31RAQ8NI17 732 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 SEMA6BQ9H3T3 888 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 DNM3Q9UQ16 869 aa23.08■■□□□ 1.29
VPS28-209ENST00000528142 OAZ1P54368 228 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 RPS6P62753 249 aaKnown RBP23.08■■□□□ 1.28
VPS28-209ENST00000528142 VGLL4Q14135 290 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 NIPA1Q7RTP0 329 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 SULF1Q8IWU6 871 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 SYT2Q8N9I0 419 aaPredicted RBP23.08■■□□□ 1.28
VPS28-209ENST00000528142 ZNF577Q9BSK1 485 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 PANK4Q9NVE7 773 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 RIPK3Q9Y572 518 aa23.08■■□□□ 1.28
VPS28-209ENST00000528142 EEF1GP26641 437 aaKnown RBP23.07■■□□□ 1.28
VPS28-209ENST00000528142 PCNX4Q63HM2 1172 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 KRT26Q7Z3Y9 468 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 CSGALNACT2Q8N6G5 542 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 ANKRD20A12PQ8NF67 263 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 KCND1Q9NSA2 647 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 TAB2Q9NYJ8 693 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 TMOD4Q9NZQ9 345 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 UBIAD1Q9Y5Z9 338 aa23.07■■□□□ 1.28
VPS28-209ENST00000528142 FRMD3A2A2Y4 597 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 GAS7O60861 476 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 TAAR1Q96RJ0 339 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 RIT2Q99578 217 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 WDR11Q9BZH6 1224 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 TUFT1Q9NNX1 390 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 RGL1Q9NZL6 768 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 ZNF214Q9UL59 606 aaPredicted RBP23.06■■□□□ 1.28
VPS28-209ENST00000528142 PCDHA2Q9Y5H9 948 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 RLFQ13129 1914 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 PARP14Q460N5 1801 aa23.06■■□□□ 1.28
VPS28-209ENST00000528142 NPHP3-ACAD11A0A0J9YXS1 232 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 ATP2A1O14983 1001 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 N4BP3O15049 544 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 SLITRK3O94933 977 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 KCNJ6P48051 423 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 CYP4A11Q02928 519 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 GOLGA8FQ08AF8 430 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 GOLGA8DPQ0D2H9 430 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 PABPC4Q13310 644 aaKnown RBP eCLIP23.05■■□□□ 1.281e-7■■■□□ 18.8
VPS28-209ENST00000528142 CCDC65Q8IXS2 484 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 RBM46Q8TBY0 533 aaKnown RBP23.05■■□□□ 1.28
VPS28-209ENST00000528142 IPO5O00410 1097 aaKnown RBP23.05■■□□□ 1.28
VPS28-209ENST00000528142 MRPS9P82933 396 aaKnown RBP23.05■■□□□ 1.28
VPS28-209ENST00000528142 RNF207Q6ZRF8 634 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 TC2NQ8N9U0 490 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 GLIS3Q8NEA6 775 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 CCDC112Q8NEF3 446 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 VPS16Q9H269 839 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 RNF146Q9NTX7 359 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 ITIH6Q6UXX5 1313 aa23.05■■□□□ 1.28
VPS28-209ENST00000528142 EYA4O95677 639 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 TMEM132BQ14DG7 1078 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 EAPPQ56P03 285 aaPredicted RBP23.04■■□□□ 1.28
VPS28-209ENST00000528142 FAM26FQ5R3K3 315 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 FOXR2Q6PJQ5 311 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 TEKT3Q9BXF9 490 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 UNC45AQ9H3U1 944 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 KCNH7Q9NS40 1196 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 PAPPA2Q9BXP8 1791 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 MYPNQ86TC9 1320 aa23.04■■□□□ 1.28
VPS28-209ENST00000528142 MUTP22033 750 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 GIT2Q14161 759 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 PGM5Q15124 567 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 TKFCQ3LXA3 575 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 SNRNP48Q6IEG0 339 aaKnown RBP23.03■■□□□ 1.28
VPS28-209ENST00000528142 TMEM139Q8IV31 216 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 ZC3H15Q8WU90 426 aaKnown RBP23.03■■□□□ 1.28
VPS28-209ENST00000528142 DYDC2Q96IM9 177 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 JADE2Q9NQC1 790 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 CHMP2AO43633 222 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 NRDCO43847 1150 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 PPP1R12BO60237 982 aaPredicted RBP23.03■■□□□ 1.28
VPS28-209ENST00000528142 CTTNQ14247 550 aaKnown RBP23.03■■□□□ 1.28
VPS28-209ENST00000528142 LRRC41Q15345 812 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 EPHA7Q15375 998 aa23.03■■□□□ 1.28
VPS28-209ENST00000528142 HOXC10Q9NYD6 342 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms