RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SMIM10L2AP0DMW4 78 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 SMIM10L2BP0DMW5 78 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 THPOP40225 353 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 MFAP1P55081 439 aaKnown RBP16.59■□□□□ 0.25
CPSF1-201ENST00000526271 ANTXR2P58335 489 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 TROAPQ12815 778 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 IKBKEQ14164 716 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 IMMTQ16891 758 aaKnown RBP16.59■□□□□ 0.25
CPSF1-201ENST00000526271 IFIT1BQ5T764 474 aaKnown RBP16.59■□□□□ 0.25
CPSF1-201ENST00000526271 KATNAL1Q9BW62 490 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 DIAPH3Q9NSV4 1193 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 KIAA1671Q9BY89 1806 aa16.59■□□□□ 0.25
CPSF1-201ENST00000526271 RSPH10B2B2RC85 870 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 CYP21A2P08686 494 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 RSPH10BP0C881 870 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 NT5C2P49902 561 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 LEXMQ3ZCV2 418 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 HOMER1Q86YM7 354 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 FAM178BQ8IXR5 827 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 MYOCDQ8IZQ8 938 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 KRT23Q9C075 422 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 LOXHD1Q8IVV2 1947 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 KAT6AQ92794 2004 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 ZNF318Q5VUA4 2279 aa16.58■□□□□ 0.24
CPSF1-201ENST00000526271 TTC3P53804 2025 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 PI4K2BG5E9Z4 385 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 H3BRB1 525 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 GPR37L1O60883 481 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 CENPBP07199 599 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-201ENST00000526271 CTSHP09668 335 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 KCNA5P22460 613 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 ICAM3P32942 547 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 COL19A1Q14993 1142 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 EPC2Q52LR7 807 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 FCHSD1Q86WN1 690 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 NEK9Q8TD19 979 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 ATP6V0A1Q93050 837 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 TOP1MTQ969P6 601 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 FAM122AQ96E09 287 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 INPP4AQ96PE3 977 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-201ENST00000526271 GPR20Q99678 358 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 UBAC1Q9BSL1 405 aa16.57■□□□□ 0.24
CPSF1-201ENST00000526271 TUT1Q9H6E5 874 aaKnown RBP16.57■□□□□ 0.24
CPSF1-201ENST00000526271 RC3H2Q9HBD1 1191 aaKnown RBP16.57■□□□□ 0.24
CPSF1-201ENST00000526271 SPATA31C2B4DYI2 1134 aa16.56■□□□□ 0.24
CPSF1-201ENST00000526271 FBXO22Q8NEZ5 403 aa16.56■□□□□ 0.24
CPSF1-201ENST00000526271 SETD4Q9NVD3 440 aa16.56■□□□□ 0.24
CPSF1-201ENST00000526271 MAP3K20Q9NYL2 800 aaKnown RBP16.56■□□□□ 0.24
CPSF1-201ENST00000526271 INSL6Q9Y581 213 aa16.56■□□□□ 0.24
CPSF1-201ENST00000526271 C17orf102A2RUQ5 167 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 GRXCR2A6NFK2 248 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 GCOM1H8Y6P7 765 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-201ENST00000526271 EFCAB14O75071 495 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 CHRNA1P02708 482 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 POLR2MP0CAP2 368 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 TGFB3P10600 412 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 CCND2P30279 289 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 TMEM31Q5JXX7 168 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 RUFY4Q6ZNE9 571 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 CYFIP1Q7L576 1253 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 MRPL38Q96DV4 380 aaKnown RBP16.55■□□□□ 0.24
CPSF1-201ENST00000526271 RWDD1Q9H446 243 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-201ENST00000526271 CNNM2Q9H8M5 875 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 RTEL1Q9NZ71 1219 aa16.55■□□□□ 0.24
CPSF1-201ENST00000526271 EMSYQ7Z589 1322 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 H3BNC9 293 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 H3BQ06 376 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-201ENST00000526271 MEIS2O14770 477 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 ATP9AO75110 1047 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 LTBRP36941 435 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 FAM26DQ5JW98 314 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 KCNV1Q6PIU1 500 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 USP17L6PQ6QN14 398 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 METTL7BQ6UX53 244 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 SAMD3Q8N6K7 520 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 IGDCC4Q8TDY8 1250 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 LMBR1Q8WVP7 490 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 CTNNA3Q9UI47 895 aa16.54■□□□□ 0.24
CPSF1-201ENST00000526271 PNMA6FA0A0J9YX94 578 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 UPP2O95045 317 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 MGAT3Q09327 533 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 TCEAL5Q5H9L2 206 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 TTC22Q5TAA0 569 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 MB21D2Q8IYB1 491 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-201ENST00000526271 LINC01599Q8WXQ3 324 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 PIBF1Q8WXW3 757 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 ZBTB10Q96DT7 871 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 MYL10Q9BUA6 226 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 EHMT1Q9H9B1 1298 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 MLXIPQ9HAP2 919 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 TECTAO75443 2155 aa16.53■□□□□ 0.24
CPSF1-201ENST00000526271 POTEB3A0JP26 581 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 E7EWF7 191 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 HIP1O00291 1037 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 AMHP03971 560 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 DLX2Q07687 328 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-201ENST00000526271 PTCRAQ6ISU1 281 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-201ENST00000526271 POTEBQ6S5H4 581 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 TMEM192Q8IY95 271 aa16.52■□□□□ 0.24
CPSF1-201ENST00000526271 GJD3Q8N144 294 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms