RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 HINFPQ9BQA5 517 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 LLPHQ9BRT6 129 aaKnown RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 LNPKQ9C0E8 428 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 SLC38A10Q9HBR0 1119 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 PCSK5Q92824 1860 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 CLRN2A0PK11 232 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 MAFGO15525 162 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 FAM155BO75949 473 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 ZKSCAN1P17029 563 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 EDNRBP24530 442 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 BRD2P25440 801 aaKnown RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 TDO2P48775 406 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 PLCD1P51178 756 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 ICA1Q05084 483 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 ZNF543Q08ER8 600 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 TRDNQ13061 729 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 VPS53Q5VIR6 699 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 PI16Q6UXB8 463 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 DHX32Q7L7V1 743 aaKnown RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 MAPKAPK5Q8IW41 473 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 DTWD2Q8NBA8 298 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 GPRC5AQ8NFJ5 357 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 IGDCC4Q8TDY8 1250 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 ZSCAN31Q96LW9 406 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 ZSCAN10Q96SZ4 725 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 SLF1Q9BQI6 1058 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 USP26Q9BXU7 913 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 NCDNQ9UBB6 729 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 LCTP09848 1927 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CLEC18AA5D8T8 446 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PDHXO00330 501 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 SH2B2O14492 632 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 SLC27A2O14975 620 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ZBED4O75132 1171 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ICAM1P05362 532 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PTPREP23469 700 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 RGS2P41220 211 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PPP1R15BQ5SWA1 713 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CLEC18BQ6UXF7 455 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ZNF574Q6ZN55 896 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 FAM43AQ8N2R8 423 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CLEC18CQ8NCF0 446 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MRRFQ96E11 262 aaKnown RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 APBA2Q99767 749 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 GPHNQ9NQX3 736 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 DKK4Q9UBT3 224 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 GJD2Q9UKL4 321 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 GABRQQ9UN88 632 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ZMYM2Q9UBW7 1377 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PRRC2BQ5JSZ5 2229 aaKnown RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 RIF1Q5UIP0 2472 aaKnown RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 ASB14A6NK59 587 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 LPXNO60711 386 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CAND2O75155 1236 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 FOSP01100 380 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 CLTBP09497 229 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 BMP3P12645 472 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 VCAM1P19320 739 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MUTP22033 750 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 INPP5BP32019 993 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 HERVK_113P62684 666 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 RBL2Q08999 1139 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 GRB10Q13322 594 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ZNF792Q3KQV3 632 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CREB3L3Q68CJ9 461 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MFSD5Q6N075 450 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PHOSPHO2Q8TCD6 241 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 OTUD7AQ8TE49 926 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.29□□□□□ -1.88
MCF2-208ENST00000519895 ASCC2Q9H1I8 757 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 ELP3Q9H9T3 547 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MKNK2Q9HBH9 465 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MSRB2Q9Y3D2 182 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 LOXHD1Q8IVV2 1947 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 E7EWF7 191 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 KINO60870 393 aaKnown RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 CABYRO75952 493 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 GH2P01242 217 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 TSPY3P0CV98 308 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 TSPY8P0CW00 308 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 AKR1B1P15121 316 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 SCP2P22307 547 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 HSD17B4P51659 736 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ERVK-9P63128 1117 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ERVK-24P63145 666 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 AP3B2Q13367 1082 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 TIGD5Q53EQ6 642 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 C4orf17Q53FE4 359 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 PLEKHH3Q7Z736 793 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 SESTD1Q86VW0 696 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 CCDC12Q8WUD4 166 aaPredicted RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 WASF1Q92558 559 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 COA7Q96BR5 231 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 TEX13BQ9BXU2 312 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 EHMT1Q9H9B1 1298 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 VTA1Q9NP79 307 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 IL17RBQ9NRM6 502 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 MRPL11Q9Y3B7 192 aaKnown RBP3.29□□□□□ -1.88
MCF2-208ENST00000519895 PCDHAC2Q9Y5I4 1007 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 RBM8AQ9Y5S9 174 aaKnown RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms