RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 TAPT1Q6NXT6 567 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 BRAPQ7Z569 592 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 NEK8Q86SG6 692 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 HS6ST3Q8IZP7 471 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 FBXO18Q8NFZ0 1043 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 TNPO1Q92973 898 aaKnown RBP8.8□□□□□ -1
LIMCH1-222ENST00000515847 AIFM3Q96NN9 605 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 INPP4AQ96PE3 977 aaPredicted RBP8.8□□□□□ -1
LIMCH1-222ENST00000515847 SENP7Q9BQF6 1050 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 WDR11Q9BZH6 1224 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 XPNPEP3Q9NQH7 507 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 KIAA1217Q5T5P2 1943 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 RBM47A0AV96 593 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 MOXD2PA6NHM9 499 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 DNM1LO00429 736 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 NOP56O00567 594 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 CABYRO75952 493 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 CD2BP2O95400 341 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 BAG4O95429 457 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 PGK1P00558 417 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 TXNP10599 105 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 FDPSP14324 419 aaKnown RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 SMPD1P17405 629 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 ICAM3P32942 547 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 RGS19P49795 217 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 LAMC2Q13753 1193 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 DUSP28Q4G0W2 176 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 RILPL1Q5EBL4 403 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 TMEM63BQ5T3F8 832 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 GJC2Q5T442 439 aaPredicted RBP8.79□□□□□ -1
LIMCH1-222ENST00000515847 MCTP1Q6DN14 999 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 UBE2Q1Q7Z7E8 422 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 TLK2Q86UE8 772 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 NOSTRINQ8IVI9 506 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 OR6J1Q8NGC5 347 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 TBCKQ8TEA7 893 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 PGBD1Q96JS3 809 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 KATNAL1Q9BW62 490 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 RAB34Q9BZG1 259 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 JADE2Q9NQC1 790 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 TBC1D22BQ9NU19 505 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 POLR3EQ9NVU0 708 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 KCNJ14Q9UNX9 436 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 CEP131Q9UPN4 1083 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 ATP6V1DQ9Y5K8 247 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 SYNRGQ9UMZ2 1314 aa8.79□□□□□ -1
LIMCH1-222ENST00000515847 VPS37CA5D8V6 355 aaPredicted RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 MYADML2A6NDP7 307 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 ADAMTS3O15072 1205 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 TBX3O15119 743 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 ADAMTS4O75173 837 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 RGS20O76081 388 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 ARIH2O95376 493 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 CST5P28325 142 aaPredicted RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 CIITAP33076 1130 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 LRRC41Q15345 812 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 LETM2Q2VYF4 491 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 PPP4R3AQ6IN85 833 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 METTL7BQ6UX53 244 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 SEPT14Q6ZU15 432 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 PIK3AP1Q6ZUJ8 805 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 DHX37Q8IY37 1157 aaKnown RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 SLFN12Q8IYM2 578 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 EMID1Q96A84 441 aaPredicted RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 PAWRQ96IZ0 340 aaKnown RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 MXRA8Q9BRK3 442 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 TSEN34Q9BSV6 310 aaKnown RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 ZSCAN16Q9H4T2 348 aaPredicted RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 MLXIPQ9HAP2 919 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 TMEM260Q9NX78 707 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 DDX25Q9UHL0 483 aaKnown RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 ZNF215Q9UL58 517 aaPredicted RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 GNEQ9Y223 722 aaKnown RBP8.78□□□□□ -1
LIMCH1-222ENST00000515847 NFASCO94856 1347 aa8.78□□□□□ -1
LIMCH1-222ENST00000515847 LAD1O00515 517 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 NEMFO60524 1076 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 CCNT1O60563 726 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 DKC1O60832 514 aaKnown RBP eCLIP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 SLC34A2O95436 690 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 NUDT7P0C024 238 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 C6orf222P0C671 652 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 FOSBP53539 338 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 GJA9P57773 515 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 MRPS9P82933 396 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 KRT76Q01546 638 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 MLLT1Q03111 559 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 TMEM266Q2M3C6 531 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 NECAB2Q7Z6G3 386 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 PLA2G4DQ86XP0 818 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 SMAP1Q8IYB5 467 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 RDM1Q8NG50 284 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 PPTC7Q8NI37 304 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 RASGRP4Q8TDF6 673 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 COPS5Q92905 334 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 FAM20AQ96MK3 541 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 GLT1D1Q96MS3 346 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 ZNF577Q9BSK1 485 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 HTATIP2Q9BUP3 242 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 UPF3AQ9H1J1 476 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 C11orf49Q9H6J7 331 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms