RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 ERVK-24P63145 666 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 ARHGAP4P98171 946 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 AP3B2Q13367 1082 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 TNFAIP1Q13829 316 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 SNX29Q8TEQ0 813 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 CRYGNQ8WXF5 182 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 CALML4Q96GE6 196 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 PNMA5Q96PV4 448 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 ZNF341Q9BYN7 854 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 IRX2Q9BZI1 471 aaPredicted RBP12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 TRIM9Q9C026 710 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 TAB2Q9NYJ8 693 aa12.24□□□□□ -0.45
SH3RF1-203ENST00000508685 SPDYE3A6NKU9 549 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 PDIA5Q14554 519 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 MUM1L1Q5H9M0 696 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 WDR93Q6P2C0 686 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 GIMAP8Q8ND71 665 aaPredicted RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 RAB34Q9BZG1 259 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 TSPYL1Q9H0U9 437 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 DEFB129Q9H1M3 183 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 EPC1Q9H2F5 836 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 BLOC1S4Q9NUP1 217 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 ZNHIT6Q9NWK9 470 aaKnown RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 CWC15Q9P013 229 aaKnown RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 PCDHA12Q9UN75 941 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 SBF1O95248 1867 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 ATAD5Q96QE3 1844 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 FAM86B1E9PN63 330 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 MARCH6O60337 910 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 FAM86B2P0C5J1 330 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 CYLC1P35663 651 aaPredicted RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 USP11P51784 963 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 AMPD3Q01432 767 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 CKAP4Q07065 602 aaKnown RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 ECM1Q16610 540 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 MAP9Q49MG5 647 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 PRR16Q569H4 304 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 KCNK18Q7Z418 384 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 CCDC170Q8IYT3 715 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 ACRBPQ8NEB7 543 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 ZNF507Q8TCN5 953 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 TBC1D5Q92609 795 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 KCNMB3Q9NPA1 279 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 PUF60Q9UHX1 559 aaKnown RBP12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 L1RE1Q9UN81 338 aa12.23□□□□□ -0.45
SH3RF1-203ENST00000508685 TRIM49BA6NDI0 452 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 ERICH4A6NGS2 130 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 KRT86O43790 486 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 IPO7O95373 1038 aaKnown RBP12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 CFBP00751 764 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 MMP14P50281 582 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 CDK17Q00537 523 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 AMPD2Q01433 879 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 MCM6Q14566 821 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 COBLL1Q53SF7 1204 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 NBPF12Q5TAG4 269 aaPredicted RBP12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 PRAMEF18Q5VWM3 479 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 KRT79Q5XKE5 535 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 HPS3Q969F9 1004 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 CDK5RAP3Q96JB5 506 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 RANBP17Q9H2T7 1088 aaKnown RBP12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 SH2D4AQ9H788 454 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 VIPAS39Q9H9C1 493 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 FZD1Q9UP38 647 aa12.22□□□□□ -0.45
SH3RF1-203ENST00000508685 CYP3A7-CYP3A51PA0A087WV96 503 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 CYP3A7P24462 503 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 SREBF1P36956 1147 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 STAT3P40763 770 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 PMS1P54277 932 aaKnown RBP12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 ASIC1P78348 528 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 MEA1Q16626 185 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 FIGNQ5HY92 759 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 IQCEQ6IPM2 695 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 CYP2W1Q8TAV3 490 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 CHURC1Q8WUH1 139 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 LARP4BQ92615 738 aaKnown RBP12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 LENG9Q96B70 501 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 SLF1Q9BQI6 1058 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 MED4Q9NPJ6 270 aa12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 ZC3H4Q9UPT8 1303 aaKnown RBP12.21□□□□□ -0.45
SH3RF1-203ENST00000508685 ANO9A1A5B4 782 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 TARSL2A2RTX5 802 aaKnown RBP12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 FCER1AP12319 257 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 INPP5BP32019 993 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 STK4Q13043 487 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 HSP90B2PQ58FF3 399 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 PAPD7Q5XG87 772 aaKnown RBP12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 TRAPPC11Q7Z392 1133 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 IRF2BP1Q8IU81 584 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 ETNPPLQ8TBG4 499 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 TRIM47Q96LD4 638 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 MBOAT7Q96N66 472 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 C7orf25Q9BPX7 421 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 TSGA10Q9BZW7 698 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 EXOC1Q9NV70 894 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 ADAM21Q9UKJ8 722 aa12.21□□□□□ -0.46
SH3RF1-203ENST00000508685 A0A1W2PQJ5 194 aa12.2□□□□□ -0.46
SH3RF1-203ENST00000508685 TTC26A0AVF1 554 aa12.2□□□□□ -0.46
SH3RF1-203ENST00000508685 MYMKA6NI61 221 aa12.2□□□□□ -0.46
SH3RF1-203ENST00000508685 PIK3CDO00329 1044 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms