RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 SOGA3Q5TF21 947 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 KLHL7Q8IXQ5 586 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 FAM133AQ8N9E0 248 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 CDK5RAP3Q96JB5 506 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 EDEM3Q9BZQ6 932 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 TMEM59LQ9UK28 342 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 NR1D1P20393 614 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 ERVK-9P63128 1117 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 ITGB3BPQ13352 177 aaPredicted RBP13.09□□□□□ -0.31
UBE3D-206ENST00000505226 DDX42Q86XP3 938 aaKnown RBP eCLIP13.09□□□□□ -0.31
UBE3D-206ENST00000505226 CD302Q8IX05 232 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 NELFCDQ8IXH7 590 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 MYOCDQ8IZQ8 938 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 OR2W6PQ8NHA6 318 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 HAS1Q92839 578 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 ANKRD2Q9GZV1 360 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 EPN3Q9H201 632 aa13.09□□□□□ -0.31
UBE3D-206ENST00000505226 FGFR1OPO95684 399 aaKnown RBP13.08□□□□□ -0.31
UBE3D-206ENST00000505226 FKBP3Q00688 224 aaKnown RBP13.08□□□□□ -0.31
UBE3D-206ENST00000505226 PTGISQ16647 500 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 USP38Q8NB14 1042 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 NLRP3Q96P20 1036 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.08□□□□□ -0.31
UBE3D-206ENST00000505226 RTFDC1Q9BY42 306 aaPredicted RBP13.08□□□□□ -0.31
UBE3D-206ENST00000505226 RNF14Q9UBS8 474 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 SEC63Q9UGP8 760 aaKnown RBP13.08□□□□□ -0.31
UBE3D-206ENST00000505226 TSKSQ9UJT2 592 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 PLAAQ9Y263 795 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 PCDHA2Q9Y5H9 948 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 CAPN7Q9Y6W3 813 aa13.08□□□□□ -0.31
UBE3D-206ENST00000505226 COL14A1Q05707 1796 aaKnown RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 PPP4CP60510 307 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 HDLBPQ00341 1268 aaKnown RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 UAP1Q16222 522 aaPredicted RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 SPTY2D1Q68D10 685 aaPredicted RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 DPY19L2P1Q6NXN4 242 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 TRIM59Q8IWR1 403 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 NEDD1Q8NHV4 660 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 ZNF473Q8WTR7 871 aaKnown RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 SYN2Q92777 582 aaPredicted RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 NEUROG2Q9H2A3 272 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 RIOX1Q9H6W3 641 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 RIC8AQ9NPQ8 531 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 WNK3Q9BYP7 1800 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 NAV1Q8NEY1 1877 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 MEFVO15553 781 aaPredicted RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 ACTN1P12814 892 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 RAPGEF1Q13905 1077 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 PDIA5Q14554 519 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 UBE2SQ16763 222 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 CCDC40Q4G0X9 1142 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 C16orf86Q6ZW13 317 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 CLEC10AQ8IUN9 316 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 CNPY4Q8N129 248 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 PRPF38AQ8NAV1 312 aaKnown RBP13.08□□□□□ -0.32
UBE3D-206ENST00000505226 ATP6V1G3Q96LB4 118 aa13.08□□□□□ -0.32
UBE3D-206ENST00000505226 H0YGN5 161 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PPP1R37O75864 691 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 ZBTB48P10074 688 aaPredicted RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 MCTP2Q6DN12 878 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 CCT8L2Q96SF2 557 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 GANQ9H2C0 597 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 LRRC4CQ9HCJ2 640 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PANK4Q9NVE7 773 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 NFS1Q9Y697 457 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 CDK5RAP2Q96SN8 1893 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 ESYT2A0FGR8 921 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PPP1R11O60927 126 aaPredicted RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 FLT3P36888 993 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 MDH1P40925 334 aaKnown RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PSMD2Q13200 908 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 NFIXQ14938 502 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 CEP85LQ5SZL2 805 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PROM2Q8N271 834 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 MYCBPAPQ8TBZ2 947 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 TSG101Q99816 390 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 COL16A1Q07092 1604 aaPredicted RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 COL5A3P25940 1745 aaPredicted RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 SBF2Q86WG5 1849 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 E9PMD0 336 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PDHBP11177 359 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 HSPA9P38646 679 aaKnown RBP13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PTK2Q05397 1052 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 KRT79Q5XKE5 535 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 PTF1AQ7RTS3 328 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 AMIGO3Q86WK7 504 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 SCFD1Q8WVM8 642 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 KCTD10Q9H3F6 313 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 AIPL1Q9NZN9 384 aa13.07□□□□□ -0.32
UBE3D-206ENST00000505226 KCNK3O14649 394 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 HSD17B3P37058 310 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 KLHL30Q0D2K2 578 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 FAM26FQ5R3K3 315 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 SWT1Q5T5J6 900 aaKnown RBP13.06□□□□□ -0.32
UBE3D-206ENST00000505226 B4GALNT4Q76KP1 1039 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 ZNF571Q7Z3V5 609 aaPredicted RBP13.06□□□□□ -0.32
UBE3D-206ENST00000505226 IRF2BP2Q7Z5L9 587 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 NLRP14Q86W24 1093 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 AP1M1Q9BXS5 423 aa13.06□□□□□ -0.32
UBE3D-206ENST00000505226 MYH4Q9Y623 1939 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms