RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 JAKMIP2Q96AA8 810 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CCDC42Q96M95 316 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CSRNP1Q96S65 589 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 IRX2Q9BZI1 471 aaPredicted RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 NHEJ1Q9H9Q4 299 aaPredicted RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 GOPCQ9HD26 462 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 ARFGAP3Q9NP61 516 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 ZNF219Q9P2Y4 722 aaPredicted RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 FAM184BQ9ULE4 1060 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 PLAGL2Q9UPG8 496 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 KIAA1024Q9UPX6 916 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 FER1L6Q2WGJ9 1857 aa13.27□□□□□ -0.28
NUP54-202ENST00000502850 ANO9A1A5B4 782 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 FRMD3A2A2Y4 597 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 ZRANB2O95218 330 aaKnown RBP eCLIP13.27□□□□□ -0.29
NUP54-202ENST00000502850 SSBP05455 408 aaKnown RBP eCLIP13.27□□□□□ -0.29
NUP54-202ENST00000502850 CYP3A4P08684 503 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 HSPA6P17066 643 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 MARSP56192 900 aaKnown RBP13.27□□□□□ -0.29
NUP54-202ENST00000502850 KIF5AQ12840 1032 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 EDRF1Q3B7T1 1238 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 CCDC40Q4G0X9 1142 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 ZCWPW2Q504Y3 356 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 KCNK18Q7Z418 384 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 GPBP1Q86WP2 473 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 NEK11Q8NG66 645 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 ETNPPLQ8TBG4 499 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 C7orf43Q8WVR3 580 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 NUDT12Q9BQG2 462 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 VPS33BQ9H267 617 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 LUC7LQ9NQ29 371 aaKnown RBP13.27□□□□□ -0.29
NUP54-202ENST00000502850 KCNQ5Q9NR82 932 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 MYO6Q9UM54 1294 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 SIK3Q9Y2K2 1263 aa13.27□□□□□ -0.29
NUP54-202ENST00000502850 ZC3H4Q9UPT8 1303 aaKnown RBP13.27□□□□□ -0.29
NUP54-202ENST00000502850 DICER1Q9UPY3 1922 aaKnown RBP13.26□□□□□ -0.29
NUP54-202ENST00000502850 NFKBIEO00221 500 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 GDF11O95390 407 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 GH2P01242 217 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 MCM3P25205 808 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 RPA1P27694 616 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 PRELPP51888 382 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 STAT2P52630 851 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 VAV2P52735 878 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 FKBP1CQ5VVH2 108 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 IQCEQ6IPM2 695 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 SIAH1Q8IUQ4 282 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 RTKN2Q8IZC4 609 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 HPS3Q969F9 1004 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 TDRD3Q9H7E2 651 aaKnown RBP13.26□□□□□ -0.29
NUP54-202ENST00000502850 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.26□□□□□ -0.29
NUP54-202ENST00000502850 AGPAT5Q9NUQ2 364 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 ZNF446Q9NWS9 450 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 GUCA1BQ9UMX6 200 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 DNM3Q9UQ16 869 aa13.26□□□□□ -0.29
NUP54-202ENST00000502850 REXO2Q9Y3B8 237 aaKnown RBP13.26□□□□□ -0.29
NUP54-202ENST00000502850 POTEB3A0JP26 581 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 FAM196BA6NMK8 535 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 POTECB2RU33 542 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 PNMA6AP0CW24 399 aaPredicted RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 HERVK_113P62684 666 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 HERC4Q5GLZ8 1057 aaPredicted RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 RSBN1LQ6PCB5 846 aaPredicted RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 POTEBQ6S5H4 581 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 CACNA2D4Q7Z3S7 1137 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 ZC3H3Q8IXZ2 948 aaKnown RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 MSANTD4Q8NCY6 345 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 HNRNPLLQ8WVV9 542 aaKnown RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 FAM151AQ8WW52 585 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 SYN2Q92777 582 aaPredicted RBP13.25□□□□□ -0.29
NUP54-202ENST00000502850 DEF6Q9H4E7 631 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 RRAGCQ9HB90 399 aa13.25□□□□□ -0.29
NUP54-202ENST00000502850 TRAF5O00463 557 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PLA2G6O60733 806 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 LCA5LO95447 670 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 CYP11B2P19099 503 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 MUTP22033 750 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 ZNF76P36508 570 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SLC12A3P55017 1021 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 AMPD2Q01433 879 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 DMTNQ08495 405 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 ECM1Q16610 540 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PRR16Q569H4 304 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 CC2D1AQ6P1N0 951 aaPredicted RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 TRAPPC11Q7Z392 1133 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 FAM160B2Q86V87 743 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 OGFOD1Q8N543 542 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 TRIM58Q8NG06 486 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 CHURC1Q8WUH1 139 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PSMD1Q99460 953 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 POLR3CQ9BUI4 534 aaPredicted RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 TANGO6Q9C0B7 1094 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 MMRN2Q9H8L6 949 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 CEP72Q9P209 647 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 TMX2Q9Y320 296 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 RABGAP1Q9Y3P9 1069 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 FHOD1Q9Y613 1164 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SSU72P8A0A1W2PR75 194 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 GLTPD2A6NH11 291 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SPDYE2BA6NHP3 402 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms