RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LDLRAD1Q5T700 205 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 TMC3Q7Z5M5 1100 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 LILRA2Q8N149 483 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 ZNF655Q8N720 491 aaPredicted RBP5.46□□□□□ -1.54
USP54-217ENST00000498213 ANKS4BQ8N8V4 417 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 DAGLBQ8NCG7 672 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 MRRFQ96E11 262 aaKnown RBP5.46□□□□□ -1.54
USP54-217ENST00000498213 SNX27Q96L92 541 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 CRBNQ96SW2 442 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 HDAC8Q9BY41 377 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 EPB41L4BQ9H329 900 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 SAGE1Q9NXZ1 904 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 GPR160Q9UJ42 338 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 ZNRF3Q9ULT6 936 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 RAB3GAP2Q9H2M9 1393 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 NFAT5O94916 1531 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 MEIS1O00470 390 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 TNFRSF10CO14798 259 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 SIGLEC6O43699 453 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 FKTNO75072 461 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 PRAMEF1O95521 474 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 SYPP08247 313 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 TRHRP34981 398 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 TEKQ02763 1124 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 FBXO46Q6PJ61 603 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP54-217ENST00000498213 CCDC144CPQ8IYA2 1237 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 FBXO15Q8NCQ5 510 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 VWCEQ96DN2 955 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 TCTN2Q96GX1 697 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 GLIS2Q9BZE0 524 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 FOXP3Q9BZS1 431 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 PRDM14Q9GZV8 571 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 DCP1AQ9NPI6 582 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 CHST7Q9NS84 486 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 DDX41Q9UJV9 622 aaKnown RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 TCFL5Q9UL49 500 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 EVC2Q86UK5 1308 aa5.45□□□□□ -1.54
USP54-217ENST00000498213 CENPJQ9HC77 1338 aaPredicted RBP5.45□□□□□ -1.54
USP54-217ENST00000498213 RANBP2P49792 3224 aaKnown RBP5.44□□□□□ -1.54
USP54-217ENST00000498213 UNC80Q8N2C7 3258 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 BRCA2P51587 3418 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 PRRG2O14669 202 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 CYP27B1O15528 508 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 TM4SF1P30408 202 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 EPS15P42566 896 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 HUNKP57058 714 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 SNW1Q13573 536 aaKnown RBP5.44□□□□□ -1.54
USP54-217ENST00000498213 SLC14A2Q15849 920 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 CCDC88AQ3V6T2 1871 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 DLK2Q6UY11 383 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 Q7L0L9 218 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 TMEM192Q8IY95 271 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 HHIPL1Q96JK4 782 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 SPATA32Q96LK8 384 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 SLC9A7Q96T83 725 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 TM9SF2Q99805 663 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 DSCC1Q9BVC3 393 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 RNF32Q9H0A6 362 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 SLC6A17Q9H1V8 727 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 ZNF277Q9NRM2 450 aaPredicted RBP5.44□□□□□ -1.54
USP54-217ENST00000498213 GFOD1Q9NXC2 390 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 SUCOQ9UBS9 1254 aaKnown RBP5.44□□□□□ -1.54
USP54-217ENST00000498213 PPT2Q9UMR5 302 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 NCANO14594 1321 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 VCANP13611 3396 aa5.44□□□□□ -1.54
USP54-217ENST00000498213 ADAMTSL1Q8N6G6 1762 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 B8ZZF3 427 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 TBC1D8O95759 1140 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 KRT1P04264 644 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 SERPINB2P05120 415 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 ENDOUP21128 410 aaKnown RBP5.43□□□□□ -1.54
USP54-217ENST00000498213 PDE6BP35913 854 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 RACK1P63244 317 aaKnown RBP5.43□□□□□ -1.54
USP54-217ENST00000498213 PAK2Q13177 524 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 COL9A2Q14055 689 aaPredicted RBP5.43□□□□□ -1.54
USP54-217ENST00000498213 NFIXQ14938 502 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 NME9Q86XW9 330 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 DEFB123Q8N688 67 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 RAPGEF4Q8WZA2 1011 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 IP6K1Q92551 441 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 CWC22Q9HCG8 908 aaKnown RBP5.43□□□□□ -1.54
USP54-217ENST00000498213 TMOD3Q9NYL9 352 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 USP42Q9H9J4 1324 aaKnown RBP5.43□□□□□ -1.54
USP54-217ENST00000498213 LTBP3Q9NS15 1303 aa5.43□□□□□ -1.54
USP54-217ENST00000498213 CARMIL3Q8ND23 1372 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 NPIPB6E9PJ23 425 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 USP2O75604 605 aaPredicted RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 TMEM253P0C7T8 217 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 AUHQ13825 339 aaKnown RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 NR0B2Q15466 257 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 NOL9Q5SY16 702 aaKnown RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 LCE5AQ5TCM9 118 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 NBPF6Q5VWK0 638 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 TDRD10Q5VZ19 366 aaKnown RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 INTS3Q68E01 1043 aaKnown RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 CWF19L1Q69YN2 538 aaKnown RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 CCDC81Q6ZN84 652 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 CEP128Q6ZU80 1094 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 TTLL10Q6ZVT0 673 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms